PMID- 14757416 OWN - NLM STAT- MEDLINE DCOM- 20040930 LR - 20191108 IS - 1079-9796 (Print) IS - 1079-9796 (Linking) VI - 32 IP - 1 DP - 2004 Jan-Feb TI - Applications and technical challenges of fluorescence in situ hybridization in stem cell research. PG - 68-76 AB - Stem cell research, maintenance, and manipulations have advanced significantly in recent years, and we now witness successful clinical applications of stem therapies. However, challenges in regard to karyotypic stability and the ploidy status of stem cell lines have been addressed only marginally. Our approach to develop technology to address these highly relevant issues is based on fluorescence in situ hybridization (FISH) using nonisotopically labeled DNA probes. As a single cell analysis technique, FISH is expected to be applicable to a variety of cells and tissues including interphase and metaphase cell preparations as well as tissue sections and biopsy material. Over the last decade, our laboratories generated a large number of probes and probe sets for the molecular cytogenetic analyses of stem cells derived from different species. These probes and the introduction of spectral imaging bring us close to be able to perform a comprehensive karyotype analysis of single interphase cell nuclei. It should furthermore be possible to couple cytogenetic investigations of the cellular genotype with analysis of gene expression. This report summarizes our technical achievements relevant to stem cell research and outlines plans for future research and developments. FAU - Weier, Heinz-Ulli G AU - Weier HU AD - Life Sciences Division 74-157, University of California, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. ugweier@lbl.gov FAU - Chu, Lisa W AU - Chu LW FAU - Murnane, John P AU - Murnane JP FAU - Weier, Jingly F AU - Weier JF LA - eng GR - CA80792/CA/NCI NIH HHS/United States GR - CA88258/CA/NCI NIH HHS/United States GR - ES08627/ES/NIEHS NIH HHS/United States GR - K25HD041425/HD/NICHD NIH HHS/United States PT - Journal Article PT - Research Support, Non-U.S. Gov't PT - Research Support, U.S. Gov't, Non-P.H.S. PT - Research Support, U.S. Gov't, P.H.S. PL - United States TA - Blood Cells Mol Dis JT - Blood cells, molecules & diseases JID - 9509932 RN - 0 (DNA Probes) SB - IM MH - DNA Probes MH - Embryo, Mammalian MH - Humans MH - In Situ Hybridization, Fluorescence/*methods MH - Interphase MH - Ploidies MH - Spectral Karyotyping MH - Stem Cells/*cytology EDAT- 2004/02/06 05:00 MHDA- 2004/10/01 05:00 CRDT- 2004/02/06 05:00 PHST- 2004/02/06 05:00 [pubmed] PHST- 2004/10/01 05:00 [medline] PHST- 2004/02/06 05:00 [entrez] AID - S1079979603002614 [pii] AID - 10.1016/j.bcmd.2003.09.017 [doi] PST - ppublish SO - Blood Cells Mol Dis. 2004 Jan-Feb;32(1):68-76. doi: 10.1016/j.bcmd.2003.09.017.