PMID- 17312943
OWN - NLM
STAT- MEDLINE
DCOM- 20070424
LR  - 20191026
IS  - 1042-5179 (Print)
IS  - 1026-7913 (Linking)
VI  - 17
IP  - 4
DP  - 2006 Aug
TI  - An efficient algorithm after ungapped analysis in BLAST.
PG  - 247-53
AB  - Basic Local Alignment Search Tool (BLAST) is a popular tool used for determining 
      the patterns in genomic sequences. The algorithm of BLAST has gone for various 
      changes from time to time. One third of the time is taken by BLAST to perform the 
      gapped analysis on the sequences. An efficient algorithm has been presented that 
      employs a new approach for curtailing the amount of sequences that proceed for 
      gapped alignment. So this method will work after the ungapped alignment process 
      is over. This works because of the fact that it is not necessary to perform 
      gapped alignment for all the sequences that are coming from ungapped analysis. 
      There is a significant increase in speed of the alignment process without 
      compromising on the sensitivity of the result.
FAU - Garg, Deepak
AU  - Garg D
AD  - Faculty of Computer Science and Engineering, Thapar Institute of Engineering and 
      Technology, Patiala, India. deep108@yahoo.com
FAU - Saxena, Suresh C
AU  - Saxena SC
FAU - Bhardwaj, Lalit M
AU  - Bhardwaj LM
LA  - eng
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
PT  - Retracted Publication
PL  - England
TA  - DNA Seq
JT  - DNA sequence : the journal of DNA sequencing and mapping
JID - 9107800
SB  - IM
RIN - DNA Seq. 2007 Oct;18(5):405. PMID: 18163244
MH  - *Algorithms
MH  - Base Sequence/*genetics
MH  - Computational Biology/*methods
MH  - Databases, Genetic
MH  - Sequence Alignment/*methods
MH  - *Software
EDAT- 2007/02/23 09:00
MHDA- 2007/04/25 09:00
CRDT- 2007/02/23 09:00
PHST- 2007/02/23 09:00 [pubmed]
PHST- 2007/04/25 09:00 [medline]
PHST- 2007/02/23 09:00 [entrez]
AID - 10.1080/10425170600805128 [doi]
PST - ppublish
SO  - DNA Seq. 2006 Aug;17(4):247-53. doi: 10.1080/10425170600805128.