PMID- 17550852 OWN - NLM STAT- MEDLINE DCOM- 20070703 LR - 20190608 IS - 1592-8721 (Electronic) IS - 0390-6078 (Linking) VI - 92 IP - 6 DP - 2007 Jun TI - Multiple myeloma primary cells show a highly rearranged unbalanced genome with amplifications and homozygous deletions irrespective of the presence of immunoglobulin-related chromosome translocations. PG - 795-802 AB - BACKGROUND AND OBJECTIVES: Multiple myeloma (MM) is a malignant plasma cell neoplasia in which genetic studies have shown that genomic changes may affect almost all chromosomes, as shown by fluorescence in situ hybridization (FISH) and comparative genomic hybridization (CGH). Our objective was the genomic characterization of CD 138 positive primary MM samples by means of a high resolution array CGH platform. DESIGN AND METHODS: For the first time, a high resolution array CGH with more than 40,000 probes, has been used to analyze 26 primary MM samples after the enrichment of CD138-positive plasma cells. RESULTS: This approach identified copy number imbalances in all cases. Bioinformatics strategies were optimized to perform data analysis allowing the segregation of hyperdiploid and non-hyperdiploid cases by array CGH. Additional analysis showed that structural chromosome rearrangements were more frequently seen in hyperdiploid cases. We also identified the same Xq21 duplication in nearly 20% of the cases, which originated through unbalanced chromosome translocations. High level amplifications and homozygous deletions were recurrently observed in our series and involved genes with meaningful function in cancer biology. INTERPRETATION AND CONCLUSIONS: High resolution array CGH allowed us to identify copy number changes in 100% of the primary MM samples. We segregated different MM subgroups based on their genomic profiles which made it possible to identify homozygous deletions and amplifications of great genetic relevance in MM. FAU - Largo, Cristina AU - Largo C AD - Molecular Cytogenetics Group, Centro Nacional de Investigaciones Oncologicas, Madrid, Spain. FAU - Saez, Borja AU - Saez B FAU - Alvarez, Sara AU - Alvarez S FAU - Suela, Javier AU - Suela J FAU - Ferreira, Bibiana AU - Ferreira B FAU - Blesa, David AU - Blesa D FAU - Prosper, Felipe AU - Prosper F FAU - Calasanz, M Jose AU - Calasanz MJ FAU - Cigudosa, Juan C AU - Cigudosa JC LA - eng PT - Journal Article PT - Research Support, Non-U.S. Gov't PL - Italy TA - Haematologica JT - Haematologica JID - 0417435 RN - 0 (Immunoglobulins) RN - 0 (Syndecan-1) SB - IM MH - Adult MH - Aged MH - *Chromosome Aberrations MH - Female MH - *Gene Dosage MH - Gene Rearrangement MH - Genome, Human MH - Humans MH - Immunoglobulins/*genetics MH - Male MH - Middle Aged MH - Multiple Myeloma/*genetics/*pathology MH - Oligonucleotide Array Sequence Analysis MH - Syndecan-1 MH - Translocation, Genetic EDAT- 2007/06/07 09:00 MHDA- 2007/07/04 09:00 CRDT- 2007/06/07 09:00 PHST- 2007/06/07 09:00 [pubmed] PHST- 2007/07/04 09:00 [medline] PHST- 2007/06/07 09:00 [entrez] AID - 10.3324/haematol.11052 [doi] PST - ppublish SO - Haematologica. 2007 Jun;92(6):795-802. doi: 10.3324/haematol.11052.