PMID- 17785566 OWN - NLM STAT- MEDLINE DCOM- 20070925 LR - 20070905 IS - 1078-0432 (Print) IS - 1078-0432 (Linking) VI - 13 IP - 17 DP - 2007 Sep 1 TI - Significance of HER2 low-level copy gain in Barrett's cancer: implications for fluorescence in situ hybridization testing in tissues. PG - 5115-23 AB - PURPOSE: HER2 may be a relevant biomarker in Barrett's cancer. We compared three HER2 laboratory methods, standard fluorescence in situ hybridization (FISH), image-based three-dimensional FISH in thick (16 microm) sections, and immunohistochemistry, to predict patient outcome. EXPERIMENTAL DESIGN: Tissue microarray sections from 124 Barrett's cancer patients were analyzed by standard FISH on thin (4 microm) sections and by image-based three-dimensional FISH on thick (16 microm) sections for HER2 and chromosome-17, as well for p185(HER2) by immunohistochemistry. Correlations with clinical and follow-up data were examined. RESULTS: Only three-dimensional FISH on thick (16 microm) sections revealed HER2 gene copy gain to be associated with increased disease-specific mortality (relative risk, 2.1; 95% confidence interval, 1.06-4.26; P = 0.033). In contrast, standard FISH on thin (4 microm) sections and immunohistochemistry failed to predict clinical outcome. Low-level gain of HER2 occurred frequently in Barrett's cancer (>or=2.5-4.0 HER2 copies, 59.7%; HER2-to-chromosome-17 ratio, >or=1.1-2.0; 61.2%) and defined a subpopulation for patient outcome as unfavorable as HER2 gene amplification [disease-free survival, P = 0.017 (HER2 copies)]. This low-level group was neither definable by standard FISH nor immunohistochemistry. No prognostic significance was found for chromosome-17 aneusomy. CONCLUSIONS: Low-level copy gains of HER2 define a biologically distinct subpopulation of Barrett's cancer patients. Importantly, these subtle copy number changes are not reliably detected by standard FISH in thin (4 microm) tissue sections, highlighting a thus far unrecognized weakness in HER2 FISH testing. These results should be taken into account for accurate evaluation of biomarkers by FISH and for HER2 FISH testing in tissue sections. FAU - Rauser, Sandra AU - Rauser S AD - Institute of Pathology , GSF-National Research Center for Environment and Health, Neuherberg, Germany. FAU - Weis, Roland AU - Weis R FAU - Braselmann, Herbert AU - Braselmann H FAU - Feith, Marcus AU - Feith M FAU - Stein, Hubert J AU - Stein HJ FAU - Langer, Rupert AU - Langer R FAU - Hutzler, Peter AU - Hutzler P FAU - Hausmann, Michael AU - Hausmann M FAU - Lassmann, Silke AU - Lassmann S FAU - Siewert, Jorg Rudiger AU - Siewert JR FAU - Hofler, Heinz AU - Hofler H FAU - Werner, Martin AU - Werner M FAU - Walch, Axel AU - Walch A LA - eng PT - Journal Article PT - Research Support, Non-U.S. Gov't PL - United States TA - Clin Cancer Res JT - Clinical cancer research : an official journal of the American Association for Cancer Research JID - 9502500 SB - IM MH - Aged MH - Barrett Esophagus/*complications MH - Chromosomes, Human, Pair 17 MH - Esophageal Neoplasms/*genetics/pathology MH - *Gene Dosage MH - *Genes, erbB-2 MH - Humans MH - In Situ Hybridization, Fluorescence/*methods EDAT- 2007/09/06 09:00 MHDA- 2007/09/26 09:00 CRDT- 2007/09/06 09:00 PHST- 2007/09/06 09:00 [pubmed] PHST- 2007/09/26 09:00 [medline] PHST- 2007/09/06 09:00 [entrez] AID - 13/17/5115 [pii] AID - 10.1158/1078-0432.CCR-07-0465 [doi] PST - ppublish SO - Clin Cancer Res. 2007 Sep 1;13(17):5115-23. doi: 10.1158/1078-0432.CCR-07-0465.