PMID- 18181015
OWN - NLM
STAT- MEDLINE
DCOM- 20080501
LR  - 20220410
IS  - 0920-8569 (Print)
IS  - 0920-8569 (Linking)
VI  - 36
IP  - 1
DP  - 2008 Feb
TI  - Identification of new genetic subtypes of bovine viral diarrhea virus genotype 1 
      isolated in Japan.
PG  - 135-9
LID - 10.1007/s11262-007-0190-0 [doi]
AB  - A part of the nucleotide sequence of the 5' untranslated region (5'UTR) and E rns 
      region, and the genomic regions encoding for N pro, Core, and E2 of So-like 
      isolates and IS25CP/01 strain which belong to bovine viral diarrhea virus 
      genotype 1 (BVDV-1) were determined and genetic comparisons were made with 
      sequences of other BVDV subgenotypes. Phylogenetic analysis using the 5'UTR and N 
      pro revealed that So-like isolates and IS25CP/01 branched into independent 
      phylogenetic branch. So-like isolates were clustered with Korean BVDV strains 
      taken from DDBL/EMBL/GenBank in the 5'UTR. An additional two amino acid residues 
      were found at the C terminal of the Core region of IS25CP/01. The similarity of 
      amino acid sequence of E2 of So-like isolates and IS25CP/01 to the BVDV-1 
      reference strain NADL were 78.0-78.5 and 79.0, respectively. Cross-neutralization 
      tests showed significant antigenic differences between So-like isolates and the 
      others (Antigenic similarity (R) value: 2.2-8.8), and IS25CP/01 and the others (R 
      value: 1.6-8.8). So-like viruses and IS25CP/01 differed from the thirteenth 
      subgenotypes (1a-1m) reported by Jackova et al. (2007) and were classified as new 
      genetic subtypes, BVDV-1n (So-like) and 1o (IS25CP/01).
FAU - Nagai, Makoto
AU  - Nagai M
AD  - Ishikawa Nanbu Livestock Hygiene Service Center, Kanazawa, Ishikawa 920-3101, 
      Japan.
FAU - Hayashi, Michiko
AU  - Hayashi M
FAU - Itou, Mika
AU  - Itou M
FAU - Fukutomi, Toyoko
AU  - Fukutomi T
FAU - Akashi, Hiroomi
AU  - Akashi H
FAU - Kida, Hiroshi
AU  - Kida H
FAU - Sakoda, Yoshihiro
AU  - Sakoda Y
LA  - eng
SI  - GENBANK/AB359923
SI  - GENBANK/AB359924
SI  - GENBANK/AB359925
SI  - GENBANK/AB359926
SI  - GENBANK/AB359927
SI  - GENBANK/AB359928
SI  - GENBANK/AB359929
SI  - GENBANK/AB359930
SI  - GENBANK/AB359931
SI  - GENBANK/AB359932
SI  - GENBANK/AB359933
SI  - GENBANK/AB359934
SI  - GENBANK/AB359935
SI  - GENBANK/AB359936
SI  - GENBANK/AB359937
SI  - GENBANK/AB359938
SI  - GENBANK/AB359939
SI  - GENBANK/AB359940
SI  - GENBANK/AB359941
SI  - GENBANK/AB359942
SI  - GENBANK/AB359943
SI  - GENBANK/AB359944
PT  - Journal Article
DEP - 20080108
PL  - United States
TA  - Virus Genes
JT  - Virus genes
JID - 8803967
SB  - IM
MH  - Amino Acid Sequence
MH  - Animals
MH  - Base Sequence
MH  - Bovine Virus Diarrhea-Mucosal Disease/*epidemiology/virology
MH  - Cattle
MH  - Diarrhea Virus 1, Bovine Viral/classification/*genetics/immunology/isolation & 
      purification
MH  - Genetic Variation
MH  - Genotype
MH  - Japan/epidemiology
MH  - Molecular Sequence Data
MH  - Neutralization Tests
MH  - Phylogeny
MH  - Sequence Alignment
EDAT- 2008/01/09 09:00
MHDA- 2008/05/02 09:00
CRDT- 2008/01/09 09:00
PHST- 2007/09/30 00:00 [received]
PHST- 2007/12/13 00:00 [accepted]
PHST- 2008/01/09 09:00 [pubmed]
PHST- 2008/05/02 09:00 [medline]
PHST- 2008/01/09 09:00 [entrez]
AID - 10.1007/s11262-007-0190-0 [doi]
PST - ppublish
SO  - Virus Genes. 2008 Feb;36(1):135-9. doi: 10.1007/s11262-007-0190-0. Epub 2008 Jan 
      8.