PMID- 18391232
OWN - NLM
STAT- MEDLINE
DCOM- 20080428
LR  - 20080408
IS  - 1386-6338 (Print)
IS  - 1386-6338 (Linking)
VI  - 7
IP  - 4-5
DP  - 2007
TI  - BRM-Parser: a tool for comprehensive analysis of BLAST and RepeatMasker results.
PG  - 399-403
AB  - BLAST and Repeat Masker Parser (BRM-Parser) is a service that provides users a 
      unified platform for easy analysis of relatively large outputs of BLAST (Basic 
      Local Alignment Search Tool) and RepeatMasker programs. BLAST Summary feature of 
      BRM-Parser summarizes BLAST outputs, which can be filtered using user defined 
      thresholds for hit length, percentage identity and E-value and can be sorted by 
      query or subject coordinates and length of the hit. It also provides a tool that 
      merges BLAST hits which satisfy user-defined criteria for hit length and gap 
      between hits. The RepeatMasker Summary feature uses the RepeatMasker alignment as 
      an input file and calculates the frequency and proportion of mutations in copies 
      of repeat elements, as identified by the RepeatMasker. Both features can be run 
      through a GUI or can be executed via command line using the standalone version.
FAU - Bajpai, Anjali
AU  - Bajpai A
AD  - Center for Cellular and Molecular Biology, Hyderabad - 500007, India.
FAU - Sridhar, Settu
AU  - Sridhar S
FAU - Reddy, Hemakumar M
AU  - Reddy HM
FAU - Jesudasan, Rachel A
AU  - Jesudasan RA
LA  - eng
PT  - Journal Article
PL  - Netherlands
TA  - In Silico Biol
JT  - In silico biology
JID - 9815902
SB  - IM
MH  - Algorithms
MH  - Animals
MH  - Computational Biology/*methods
MH  - Computing Methodologies
MH  - Male
MH  - Mice
MH  - Repetitive Sequences, Nucleic Acid/genetics
MH  - Sequence Alignment/*methods
MH  - *Software
MH  - Y Chromosome/genetics
EDAT- 2008/04/09 09:00
MHDA- 2008/04/29 09:00
CRDT- 2008/04/09 09:00
PHST- 2008/04/09 09:00 [pubmed]
PHST- 2008/04/29 09:00 [medline]
PHST- 2008/04/09 09:00 [entrez]
PST - ppublish
SO  - In Silico Biol. 2007;7(4-5):399-403.