PMID- 18654036
OWN - NLM
STAT- MEDLINE
DCOM- 20080815
LR  - 20191111
IS  - 0022-1260 (Print)
IS  - 0022-1260 (Linking)
VI  - 54
IP  - 3
DP  - 2008 Jun
TI  - Microbial analysis of a composted product of marine animal resources and 
      isolation of bacteria antagonistic to a plant pathogen from the compost.
PG  - 149-58
AB  - A composting product of marine animal resources has been used as a fertilizer and 
      a soil conditioner in Japan. This compost was produced by a repeated fed-batch 
      fermentation system with three successive aerobic bioreactors. Composting 
      temperature reached about 75 degrees C without heating. The bacterial diversity 
      in this compost was investigated by denaturing gradient gel electrophoresis 
      (DGGE) and sequence determination of the V3 region in the 16S rRNA genes. The 
      sequence analysis showed that a majority of retrieved sequences corresponded to 
      those of Bacillaceae, and we frequently found sequences similar to the 16S rDNA 
      sequences of Bacillus thermocloacae and Bacillus thermoamylovorans. In addition, 
      a bacterium antagonistic to a Fusarium strain was isolated from the compost. The 
      isolate (Bacillus sp. NP-1) produced an antifungal compound, iturin A. These 
      results suggest that this compost serves as a valuable source of plant 
      growth-promoting rhizobacteria including the antifungal bacteria.
FAU - Niisawa, Chie
AU  - Niisawa C
AD  - Graduate School of Science and Technology, Chiba University, Chiba, Japan.
FAU - Oka, Shin-Ichiro
AU  - Oka S
FAU - Kodama, Hiroaki
AU  - Kodama H
FAU - Hirai, Mitsuyo
AU  - Hirai M
FAU - Kumagai, Yoshifumi
AU  - Kumagai Y
FAU - Mori, Kenichi
AU  - Mori K
FAU - Matsumoto, Jirou
AU  - Matsumoto J
FAU - Miyamoto, Hisashi
AU  - Miyamoto H
FAU - Miyamoto, Hirokuni
AU  - Miyamoto H
LA  - eng
SI  - GENBANK/AB284992
SI  - GENBANK/AB284993
SI  - GENBANK/AB284994
SI  - GENBANK/AB284995
SI  - GENBANK/AB284996
SI  - GENBANK/AB284997
SI  - GENBANK/AB284998
SI  - GENBANK/AB284999
SI  - GENBANK/AB285000
SI  - GENBANK/AB285001
SI  - GENBANK/AB285002
SI  - GENBANK/AB285003
SI  - GENBANK/AB285004
SI  - GENBANK/AB285005
SI  - GENBANK/AB285006
SI  - GENBANK/AB298559
SI  - GENBANK/AB298560
SI  - GENBANK/AB298561
SI  - GENBANK/AB298562
SI  - GENBANK/AB298563
SI  - GENBANK/AB298564
SI  - GENBANK/AB298565
SI  - GENBANK/AB298566
SI  - GENBANK/AB298567
SI  - GENBANK/AB298568
SI  - GENBANK/AB298569
SI  - GENBANK/AB298570
SI  - GENBANK/AB298571
SI  - GENBANK/AB298572
SI  - GENBANK/AB298573
SI  - GENBANK/AB298574
SI  - GENBANK/AB298575
SI  - GENBANK/AB298576
SI  - GENBANK/AB298577
SI  - GENBANK/AB298578
SI  - GENBANK/AB298579
SI  - GENBANK/AB298580
SI  - GENBANK/AB298581
SI  - GENBANK/AB298582
SI  - GENBANK/AB298583
SI  - GENBANK/AB298584
SI  - GENBANK/AB298585
SI  - GENBANK/AB298586
SI  - GENBANK/AB298587
SI  - GENBANK/AB298588
SI  - GENBANK/AB298589
SI  - GENBANK/AB298590
SI  - GENBANK/AB298591
SI  - GENBANK/AB379634
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
PL  - Japan
TA  - J Gen Appl Microbiol
JT  - The Journal of general and applied microbiology
JID - 0165543
RN  - 0 (DNA, Bacterial)
RN  - 0 (DNA, Ribosomal)
RN  - 0 (Peptides, Cyclic)
RN  - 0 (RNA, Bacterial)
RN  - 0 (RNA, Ribosomal, 16S)
RN  - 0 (Soil)
RN  - 52229-90-0 (iturin A)
SB  - IM
MH  - *Antibiosis
MH  - Bacillaceae/*classification/genetics/*isolation & purification
MH  - *Bacterial Physiological Phenomena
MH  - Biodiversity
MH  - DNA, Bacterial/chemistry/genetics
MH  - DNA, Ribosomal/chemistry/genetics
MH  - Electrophoresis, Polyacrylamide Gel
MH  - Fusarium/growth & development
MH  - Genes, rRNA
MH  - Japan
MH  - Molecular Sequence Data
MH  - Nucleic Acid Denaturation
MH  - Peptides, Cyclic/biosynthesis
MH  - Phylogeny
MH  - RNA, Bacterial/genetics
MH  - RNA, Ribosomal, 16S/genetics
MH  - Sequence Analysis, DNA
MH  - Sequence Homology, Nucleic Acid
MH  - Soil
MH  - *Soil Microbiology
EDAT- 2008/07/26 09:00
MHDA- 2008/08/16 09:00
CRDT- 2008/07/26 09:00
PHST- 2008/07/26 09:00 [pubmed]
PHST- 2008/08/16 09:00 [medline]
PHST- 2008/07/26 09:00 [entrez]
AID - JST.JSTAGE/jgam/54.149 [pii]
AID - 10.2323/jgam.54.149 [doi]
PST - ppublish
SO  - J Gen Appl Microbiol. 2008 Jun;54(3):149-58. doi: 10.2323/jgam.54.149.