PMID- 18824727 OWN - NLM STAT- MEDLINE DCOM- 20090206 LR - 20220316 IS - 1552-5783 (Electronic) IS - 0146-0404 (Linking) VI - 50 IP - 2 DP - 2009 Feb TI - Chromosome 3 intratumor heterogeneity in uveal melanoma. PG - 500-4 LID - 10.1167/iovs.08-2279 [doi] AB - PURPOSE: To investigate the presence of focal or diffuse heterogeneity of monosomy 3 in uveal melanoma, by using fluorescence in situ hybridization (FISH). METHODS: Direct interphase FISH in a series of 151 uveal melanomas revealed 82 tumors with loss of chromosome 3. Tumors with monosomy 3 were suspected to be heterogeneous if there were low percentages of monosomy 3, triploid clones, inconsistencies between FISH on centromere 3 and the long arm of chromosome 3, or discrepancies between fine-needle-aspiration biopsies (FNABs) and the main tumor. These tumors (n=16), all choroidal melanomas, were selected and analyzed for intratumor heterogeneity by using FISH on paraffin-embedded tissue sections. RESULTS: Different sections of each tumor were evaluated with FISH: 6 tumors showed monosomy 3 in the same percentage throughout the tumor, and 10 showed multiple clones with different percentages of monosomy 3. However, these tumors did not show focal heterogeneity with respect to chromosome 3 status, and differences in monosomy 3 distribution between the base and apex of the tumor could not be identified. CONCLUSIONS: Although a small number of uveal melanomas show heterogeneity for chromosome 3, it does not affect survival. In the presence of triploid clones, the loss of chromosome 3 is more difficult to interpret. In general, tumor biopsies in uveal melanoma provide an accurate prediction of the patient's prognosis. FAU - Mensink, Hanneke W AU - Mensink HW AD - The Rotterdam Eye Hospital, Rotterdam, The Netherlands. FAU - Vaarwater, Jolanda AU - Vaarwater J FAU - Kilic, Emine AU - Kilic E FAU - Naus, Nicole C AU - Naus NC FAU - Mooy, Neeltje AU - Mooy N FAU - Luyten, Gre AU - Luyten G FAU - Bruggenwirth, Hennie T AU - Bruggenwirth HT FAU - Paridaens, Dion AU - Paridaens D FAU - de Klein, Annelies AU - de Klein A LA - eng PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20080929 PL - United States TA - Invest Ophthalmol Vis Sci JT - Investigative ophthalmology & visual science JID - 7703701 SB - IM MH - Choroid Neoplasms/*genetics/pathology MH - Chromosomes, Human, Pair 3/*genetics MH - Female MH - *Genetic Heterogeneity MH - Humans MH - In Situ Hybridization, Fluorescence MH - Male MH - Melanoma/*genetics/pathology MH - Middle Aged MH - Monosomy/*genetics/pathology MH - Prognosis EDAT- 2008/10/01 09:00 MHDA- 2009/02/07 09:00 CRDT- 2008/10/01 09:00 PHST- 2008/10/01 09:00 [pubmed] PHST- 2009/02/07 09:00 [medline] PHST- 2008/10/01 09:00 [entrez] AID - iovs.08-2279 [pii] AID - 10.1167/iovs.08-2279 [doi] PST - ppublish SO - Invest Ophthalmol Vis Sci. 2009 Feb;50(2):500-4. doi: 10.1167/iovs.08-2279. Epub 2008 Sep 29.