PMID- 19700540
OWN - NLM
STAT- MEDLINE
DCOM- 20091201
LR  - 20240322
IS  - 1098-5336 (Electronic)
IS  - 0099-2240 (Print)
IS  - 0099-2240 (Linking)
VI  - 75
IP  - 20
DP  - 2009 Oct
TI  - Comprehensive census of bacteria in clean rooms by using DNA microarray and 
      cloning methods.
PG  - 6559-67
LID - 10.1128/AEM.01073-09 [doi]
AB  - A census of clean room surface-associated bacterial populations was derived from 
      the results of both the cloning and sequencing of 16S rRNA genes and DNA 
      microarray (PhyloChip) analyses. Samples from the Lockheed Martin Aeronautics 
      Multiple Testing Facility (LMA-MTF), the Kennedy Space Center Payload Hazard and 
      Servicing Facility (KSC-PHSF), and the Jet Propulsion Laboratory Spacecraft 
      Assembly Facility (JPL-SAF) clean rooms were collected during the various 
      assembly phases of the Phoenix and Mars Science Laboratory (MSL) spacecraft. 
      Clone library-derived analyses detected a larger bacterial diversity prior to the 
      arrival of spacecraft hardware in these clean room facilities. PhyloChip results 
      were in agreement with this trend but also unveiled the presence of anywhere from 
      9- to 70-fold more bacterial taxa than cloning approaches. Among the facilities 
      sampled, the JPL-SAF (MSL mission) housed a significantly less diverse bacterial 
      population than either the LMA-MTF or KSC-PHSF (Phoenix mission). Bacterial taxa 
      known to thrive in arid conditions were frequently detected in MSL-associated 
      JPL-SAF samples, whereas proteobacterial lineages dominated Phoenix-associated 
      KSC-PHSF samples. Comprehensive bacterial censuses, such as that reported here, 
      will help space-faring nations preemptively identify contaminant biomatter that 
      may compromise extraterrestrial life detection experiments. The robust nature and 
      high sensitivity of DNA microarray technologies should prove beneficial to a wide 
      range of scientific, electronic, homeland security, medical, and pharmaceutical 
      applications and to any other ventures with a vested interest in monitoring and 
      controlling contamination in exceptionally clean environments.
FAU - La Duc, Myron T
AU  - La Duc MT
AD  - Biotechnology and Planetary Protection, NASA Jet Propulsion Laboratory, 
      California Institute of Technology, Mail Stop 89, Oak Grove Dr., Pasadena, CA 
      91109, USA.
FAU - Osman, Shariff
AU  - Osman S
FAU - Vaishampayan, Parag
AU  - Vaishampayan P
FAU - Piceno, Yvette
AU  - Piceno Y
FAU - Andersen, Gary
AU  - Andersen G
FAU - Spry, J A
AU  - Spry JA
FAU - Venkateswaran, Kasthuri
AU  - Venkateswaran K
LA  - eng
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SI  - GENBANK/FJ191907
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SI  - GENBANK/FJ191909
SI  - GENBANK/FJ191910
SI  - GENBANK/FJ191911
SI  - GENBANK/FJ191912
SI  - GENBANK/FJ191913
SI  - GENBANK/FJ191914
SI  - GENBANK/FJ191915
SI  - GENBANK/FJ191916
SI  - GENBANK/FJ191917
SI  - GENBANK/FJ191918
SI  - GENBANK/FJ191919
SI  - GENBANK/FJ191920
SI  - GENBANK/FJ191921
SI  - GENBANK/FJ191922
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SI  - GENBANK/FJ191971
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SI  - GENBANK/FJ191978
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SI  - GENBANK/FJ191980
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SI  - GENBANK/FJ191984
SI  - GENBANK/FJ191985
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SI  - GENBANK/FJ191987
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SI  - GENBANK/FJ191989
SI  - GENBANK/FJ191990
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SI  - GENBANK/FJ191992
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SI  - GENBANK/FJ191995
SI  - GENBANK/FJ191996
SI  - GENBANK/FJ191997
SI  - GENBANK/FJ191998
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SI  - GENBANK/FJ192001
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SI  - GENBANK/FJ192003
SI  - GENBANK/FJ192004
SI  - GENBANK/FJ192005
SI  - GENBANK/FJ192006
SI  - GENBANK/FJ192007
SI  - GENBANK/FJ192008
SI  - GENBANK/FJ192009
SI  - GENBANK/FJ192010
SI  - GENBANK/FJ192011
SI  - GENBANK/FJ192012
SI  - GENBANK/FJ192013
SI  - GENBANK/FJ192014
SI  - GENBANK/FJ192015
SI  - GENBANK/FJ192016
SI  - GENBANK/FJ192017
SI  - GENBANK/FJ192018
SI  - GENBANK/FJ192019
SI  - GENBANK/FJ192020
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SI  - GENBANK/FJ192028
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SI  - GENBANK/FJ192050
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SI  - GENBANK/FJ192064
SI  - GENBANK/FJ192065
SI  - GENBANK/FJ192066
SI  - GENBANK/FJ192067
SI  - GENBANK/FJ192068
SI  - GENBANK/FJ192069
SI  - GENBANK/FJ192070
SI  - GENBANK/FJ192071
SI  - GENBANK/FJ192072
SI  - GENBANK/FJ192073
SI  - GENBANK/FJ192074
SI  - GENBANK/FJ192075
SI  - GENBANK/FJ192076
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SI  - GENBANK/FJ192078
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SI  - GENBANK/FJ192080
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SI  - GENBANK/FJ192084
SI  - GENBANK/FJ192085
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SI  - GENBANK/FJ192087
SI  - GENBANK/FJ192088
SI  - GENBANK/FJ192089
SI  - GENBANK/FJ192090
SI  - GENBANK/FJ192091
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SI  - GENBANK/FJ192093
SI  - GENBANK/FJ192094
SI  - GENBANK/FJ192095
SI  - GENBANK/FJ192096
SI  - GENBANK/FJ192097
SI  - GENBANK/FJ192098
SI  - GENBANK/FJ192099
SI  - GENBANK/FJ192100
SI  - GENBANK/FJ192101
SI  - GENBANK/FJ192102
SI  - GENBANK/FJ192103
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SI  - GENBANK/FJ192108
SI  - GENBANK/FJ192109
SI  - GENBANK/FJ192110
SI  - GENBANK/FJ192111
SI  - GENBANK/FJ192112
SI  - GENBANK/FJ192113
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SI  - GENBANK/FJ192115
SI  - GENBANK/FJ192116
SI  - GENBANK/FJ192117
SI  - GENBANK/FJ192118
SI  - GENBANK/FJ192119
SI  - GENBANK/FJ192120
SI  - GENBANK/FJ192121
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SI  - GENBANK/FJ192123
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SI  - GENBANK/FJ192126
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SI  - GENBANK/FJ192128
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SI  - GENBANK/FJ192156
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SI  - GENBANK/FJ192158
SI  - GENBANK/FJ192159
SI  - GENBANK/FJ192160
SI  - GENBANK/FJ192161
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SI  - GENBANK/FJ192169
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SI  - GENBANK/FJ192200
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SI  - GENBANK/FJ192202
SI  - GENBANK/FJ192203
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SI  - GENBANK/FJ192205
SI  - GENBANK/FJ192206
SI  - GENBANK/FJ192207
SI  - GENBANK/FJ192208
SI  - GENBANK/FJ192209
SI  - GENBANK/FJ192210
SI  - GENBANK/FJ192211
SI  - GENBANK/FJ192212
SI  - GENBANK/FJ192213
SI  - GENBANK/FJ192214
SI  - GENBANK/FJ192215
SI  - GENBANK/FJ192216
SI  - GENBANK/FJ192217
SI  - GENBANK/FJ192218
SI  - GENBANK/FJ192219
SI  - GENBANK/FJ192220
SI  - GENBANK/FJ192221
SI  - GENBANK/FJ192222
SI  - GENBANK/FJ192223
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SI  - GENBANK/FJ192225
SI  - GENBANK/FJ192226
SI  - GENBANK/FJ192227
SI  - GENBANK/FJ192228
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SI  - GENBANK/FJ192237
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SI  - GENBANK/FJ192239
SI  - GENBANK/FJ192240
SI  - GENBANK/FJ192241
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SI  - GENBANK/FJ192243
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SI  - GENBANK/FJ192267
SI  - GENBANK/FJ192268
SI  - GENBANK/FJ192269
SI  - GENBANK/FJ192270
SI  - GENBANK/FJ192271
SI  - GENBANK/FJ192272
SI  - GENBANK/FJ192273
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SI  - GENBANK/FJ192275
SI  - GENBANK/FJ192276
SI  - GENBANK/FJ192277
SI  - GENBANK/FJ192278
SI  - GENBANK/FJ192279
SI  - GENBANK/FJ192280
SI  - GENBANK/FJ192281
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SI  - GENBANK/FJ192284
SI  - GENBANK/FJ192285
SI  - GENBANK/FJ192286
SI  - GENBANK/FJ192287
SI  - GENBANK/FJ192288
SI  - GENBANK/FJ192289
SI  - GENBANK/FJ192290
SI  - GENBANK/FJ192291
SI  - GENBANK/FJ192292
SI  - GENBANK/FJ192293
SI  - GENBANK/FJ192294
SI  - GENBANK/FJ192295
SI  - GENBANK/FJ192296
SI  - GENBANK/FJ192297
SI  - GENBANK/FJ192298
SI  - GENBANK/FJ192299
SI  - GENBANK/FJ192300
SI  - GENBANK/FJ192301
SI  - GENBANK/FJ192302
SI  - GENBANK/FJ192303
SI  - GENBANK/FJ192304
SI  - GENBANK/FJ192305
SI  - GENBANK/FJ192306
SI  - GENBANK/FJ192307
SI  - GENBANK/FJ192308
SI  - GENBANK/FJ192309
PT  - Journal Article
PT  - Research Support, U.S. Gov't, Non-P.H.S.
DEP - 20090821
PL  - United States
TA  - Appl Environ Microbiol
JT  - Applied and environmental microbiology
JID - 7605801
RN  - 0 (DNA Primers)
RN  - 0 (DNA, Bacterial)
RN  - 0 (RNA, Bacterial)
RN  - 0 (RNA, Ribosomal, 16S)
SB  - IM
MH  - Bacteria/classification/*genetics/*isolation & purification
MH  - Base Sequence
MH  - Biodiversity
MH  - Cloning, Molecular/*methods
MH  - DNA Primers/genetics
MH  - DNA, Bacterial/genetics
MH  - *Environment, Controlled
MH  - Environmental Microbiology
MH  - Extraterrestrial Environment
MH  - Genes, Bacterial
MH  - Molecular Sequence Data
MH  - Oligonucleotide Array Sequence Analysis/*methods
MH  - Phylogeny
MH  - RNA, Bacterial/genetics
MH  - RNA, Ribosomal, 16S/genetics
MH  - Space Flight
MH  - United States
MH  - United States National Aeronautics and Space Administration
PMC - PMC2765134
EDAT- 2009/08/25 09:00
MHDA- 2009/12/16 06:00
PMCR- 2010/04/01
CRDT- 2009/08/25 09:00
PHST- 2009/08/25 09:00 [entrez]
PHST- 2009/08/25 09:00 [pubmed]
PHST- 2009/12/16 06:00 [medline]
PHST- 2010/04/01 00:00 [pmc-release]
AID - AEM.01073-09 [pii]
AID - 1073-09 [pii]
AID - 10.1128/AEM.01073-09 [doi]
PST - ppublish
SO  - Appl Environ Microbiol. 2009 Oct;75(20):6559-67. doi: 10.1128/AEM.01073-09. Epub 
      2009 Aug 21.