PMID- 20190081
OWN - NLM
STAT- MEDLINE
DCOM- 20100615
LR  - 20211020
IS  - 1098-5336 (Electronic)
IS  - 0099-2240 (Print)
IS  - 0099-2240 (Linking)
VI  - 76
IP  - 8
DP  - 2010 Apr
TI  - Responses of ammonia-oxidizing bacterial and archaeal populations to organic 
      nitrogen amendments in low-nutrient groundwater.
PG  - 2517-23
LID - 10.1128/AEM.02436-09 [doi]
AB  - To evaluate the potential for organic nitrogen addition to stimulate the in situ 
      growth of ammonia oxidizers during a field scale bioremediation trial, samples 
      collected from the Eastern Snake River Plain Aquifer in Idaho before, during, and 
      after the addition of molasses and urea were subjected to PCR analysis of ammonia 
      monooxygenase subunit A (amoA) genes. Ammonia-oxidizing bacteria (AOB) and 
      archaea (AOA) were present in all of the samples tested, with AOA amoA genes 
      outnumbering AOB amoA genes in all of the samples. Following urea addition, 
      nitrate levels rose and bacterial amoA copy numbers increased dramatically, 
      suggesting that urea hydrolysis stimulated nitrification. Bacterial amoA 
      diversity was limited to two Nitrosomonas phylotypes, whereas archaeal amoA 
      analyses revealed 20 distinct operational taxonomic units, including several that 
      were markedly different from all previously reported sequences. Results from this 
      study demonstrate the likelihood of stimulating ammonia-oxidizing communities 
      during field scale manipulation of groundwater conditions to promote urea 
      hydrolysis.
FAU - Reed, David W
AU  - Reed DW
AD  - Biological Systems Department, Idaho National Laboratory, Idaho Falls, ID 
      83415-2203, USA. David.Reed@inl.gov
FAU - Smith, Jason M
AU  - Smith JM
FAU - Francis, Christopher A
AU  - Francis CA
FAU - Fujita, Yoshiko
AU  - Fujita Y
LA  - eng
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PT  - Journal Article
PT  - Research Support, U.S. Gov't, Non-P.H.S.
DEP - 20100226
PL  - United States
TA  - Appl Environ Microbiol
JT  - Applied and environmental microbiology
JID - 7605801
RN  - 0 (Archaeal Proteins)
RN  - 0 (Bacterial Proteins)
RN  - 0 (Nitrates)
RN  - 7664-41-7 (Ammonia)
RN  - 8W8T17847W (Urea)
SB  - IM
MH  - Ammonia/metabolism
MH  - Archaea/classification/genetics/*growth & development/metabolism
MH  - Archaeal Proteins/genetics
MH  - Bacteria/classification/genetics/*growth & development/metabolism
MH  - Bacterial Proteins/genetics
MH  - Cluster Analysis
MH  - Idaho
MH  - Molasses
MH  - Molecular Sequence Data
MH  - Nitrates/metabolism
MH  - Oxidation-Reduction
MH  - Phylogeny
MH  - Sequence Analysis, DNA
MH  - *Soil Microbiology
MH  - Urea/*metabolism
MH  - *Water Microbiology
PMC - PMC2849197
EDAT- 2010/03/02 06:00
MHDA- 2010/06/16 06:00
PMCR- 2010/10/01
CRDT- 2010/03/02 06:00
PHST- 2010/03/02 06:00 [entrez]
PHST- 2010/03/02 06:00 [pubmed]
PHST- 2010/06/16 06:00 [medline]
PHST- 2010/10/01 00:00 [pmc-release]
AID - AEM.02436-09 [pii]
AID - 2436-09 [pii]
AID - 10.1128/AEM.02436-09 [doi]
PST - ppublish
SO  - Appl Environ Microbiol. 2010 Apr;76(8):2517-23. doi: 10.1128/AEM.02436-09. Epub 
      2010 Feb 26.