PMID- 20393974
OWN - NLM
STAT- MEDLINE
DCOM- 20100624
LR  - 20221222
IS  - 1934-3663 (Electronic)
IS  - 1934-3655 (Linking)
VI  - Chapter 25
DP  - 2010 Apr
TI  - PRIDE: Data submission and analysis.
PG  - 25.4.1-25.4.11
LID - 10.1002/0471140864.ps2504s60 [doi]
AB  - The Proteomics Identifications database (PRIDE, http://www.ebi.ac.uk/pride) is 
      one of the main repositories designed to store, disseminate, and analyze mass 
      spectrometry-based proteomics datasets. In this unit, an overview of the PRIDE 
      system is given, including its key satellite tools: the Ontology Lookup Service 
      (OLS), the Protein Identifier Cross-Referencing Service (PICR), and Database on 
      Demand (DoD). Also described in detail are procedures for submitting data to 
      PRIDE, and accessing data stored in PRIDE using the BioMart interface. Finally, 
      to demonstrate the potential of PRIDE as a source for data mining, an example 
      protocol is provided to showcase the powerful cross-domain query capabilities 
      available through a combination of BioMarts.
FAU - Vizcaino, Juan Antonio
AU  - Vizcaino JA
AD  - European Molecular Biology Laboratory-European Bioinformatics Institute 
      (EMBL-EBI), Hinxton, Cambridge, United Kingdom.
FAU - Reisinger, Florian
AU  - Reisinger F
AD  - European Molecular Biology Laboratory-European Bioinformatics Institute 
      (EMBL-EBI), Hinxton, Cambridge, United Kingdom.
FAU - Cote, Richard
AU  - Cote R
AD  - European Molecular Biology Laboratory-European Bioinformatics Institute 
      (EMBL-EBI), Hinxton, Cambridge, United Kingdom.
FAU - Martens, Lennart
AU  - Martens L
AD  - European Molecular Biology Laboratory-European Bioinformatics Institute 
      (EMBL-EBI), Hinxton, Cambridge, United Kingdom.
LA  - eng
PT  - Journal Article
PL  - United States
TA  - Curr Protoc Protein Sci
JT  - Current protocols in protein science
JID - 101287868
SB  - IM
MH  - Database Management Systems
MH  - *Databases, Protein
MH  - Internet
MH  - Mass Spectrometry
MH  - Proteomics/*methods
MH  - Software
MH  - *User-Computer Interface
EDAT- 2010/04/16 06:00
MHDA- 2010/06/25 06:00
CRDT- 2010/04/16 06:00
PHST- 2010/04/16 06:00 [entrez]
PHST- 2010/04/16 06:00 [pubmed]
PHST- 2010/06/25 06:00 [medline]
AID - 10.1002/0471140864.ps2504s60 [doi]
PST - ppublish
SO  - Curr Protoc Protein Sci. 2010 Apr;Chapter 25:25.4.1-25.4.11. doi: 
      10.1002/0471140864.ps2504s60.