PMID- 20739052 OWN - NLM STAT- MEDLINE DCOM- 20110408 LR - 20101207 IS - 1879-3231 (Electronic) IS - 0093-691X (Linking) VI - 75 IP - 1 DP - 2011 Jan 1 TI - Molecular delineation of the Y-borne Sry gene in the Formosan pangolin (Manis pentadactyla pentadactyla) and its phylogenetic implications for Pholidota in extant mammals. PG - 55-64 LID - 10.1016/j.theriogenology.2010.07.010 [doi] AB - The systematic status of Pholidota has been a matter of debate, particularly regarding the apparent inconsistency between morphological and molecular studies. The Sry gene, a master regulator of male sex determination in eutherian mammals, has not yet been used for phylogenetic analyses of extant mammals. The objective of the present study was to clone and characterize the complete gene (1300 base pairs; bp) and amino acid sequences (229 residues) of Sry from the Formosan pangolin (Manis pentadactyla pentadactyla), a member of Pholidota. The Sry amino acid identity between pangolin and other reported species ranged from 42.5% (mouse, Mus musculus) to 84.1% (European hare, Lepus europaeus). Sequence conservation was primarily in the high motility group (HMG) box (234 bp), whereas homology outside the HMG box was low. The cloned Sry was mapped to the pangolin Y chromosome by fluorescence in situ hybridization (FISH); this was confirmed to be the first Y-borne molecular marker identified in Pholidota. Based on Bayesian phylogenetic analysis for Sry HMG sequences from 36 representative taxa, including the Formosan pangolin, Pholidota was more closely related to Carnivora than to Xenarthra, consistent with the emerging molecular tree inferred from markers not located on the Y chromosome. In conclusion, this study characterized the gene structure of Sry of the Formosan pangolin and provided insights into the phylogenetic position of Pholidota. CI - Copyright (c) 2011 Elsevier Inc. All rights reserved. FAU - Yu, Hon-Tsen AU - Yu HT AD - Institute of Zoology, Department of Life Science, National Taiwan University, Taipei, Taiwan. FAU - Ma, Gwo-Chin AU - Ma GC FAU - Lee, Dong-Jay AU - Lee DJ FAU - Chin, Shih-Chien AU - Chin SC FAU - Tsao, Hsien-Shao AU - Tsao HS FAU - Wu, Sheng-Hai AU - Wu SH FAU - Shih, Shu-Yi AU - Shih SY FAU - Chen, Ming AU - Chen M LA - eng PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20100823 PL - United States TA - Theriogenology JT - Theriogenology JID - 0421510 SB - IM MH - Amino Acid Sequence MH - Animals MH - Base Sequence MH - Bayes Theorem MH - Cloning, Molecular MH - Conserved Sequence MH - *Genes, sry MH - In Situ Hybridization, Fluorescence MH - Mammals/classification/*genetics MH - Molecular Sequence Data MH - *Phylogeny MH - Sequence Analysis, Protein MH - Y Chromosome/chemistry EDAT- 2010/08/27 06:00 MHDA- 2011/04/09 06:00 CRDT- 2010/08/27 06:00 PHST- 2009/12/14 00:00 [received] PHST- 2010/07/16 00:00 [revised] PHST- 2010/07/18 00:00 [accepted] PHST- 2010/08/27 06:00 [entrez] PHST- 2010/08/27 06:00 [pubmed] PHST- 2011/04/09 06:00 [medline] AID - S0093-691X(10)00387-0 [pii] AID - 10.1016/j.theriogenology.2010.07.010 [doi] PST - ppublish SO - Theriogenology. 2011 Jan 1;75(1):55-64. doi: 10.1016/j.theriogenology.2010.07.010. Epub 2010 Aug 23.