PMID- 20871214 OWN - NLM STAT- MEDLINE DCOM- 20101014 LR - 20151119 IS - 1532-0979 (Electronic) IS - 0147-5185 (Linking) VI - 34 IP - 10 DP - 2010 Oct TI - A distinctive subset of PEComas harbors TFE3 gene fusions. PG - 1395-406 LID - 10.1097/PAS.0b013e3181f17ac0 [doi] AB - Perivascular epithelioid cell neoplasms (PEComas) include the common renal angiomyolipoma, pulmonary clear cell sugar tumor, lymphangioleiomyomatosis, and less common neoplasms of soft tissue, gynecologic, and gastrointestinal tracts. Recently, aberrant immunoreactivity for TFE3 protein (a sensitive and specific marker of neoplasms harboring TFE3 gene fusions) has been reported in as many as 100% of PEComas; however, TFE3 gene status in these neoplasms has not been systematically investigated. We used a fluorescence in situ hybridization (FISH) break-apart assay to evaluate for evidence of TFE3 gene fusions in archival material from 29 PEComas. These cases included 2 earlier published TFE3 immunoreactive nonrenal PEComas, 14 additional nonrenal PEComas, and 13 renal angiomyolipomas with predominantly spindle or epithelioid morphology. Four nonrenal PEComas (mean patient age 24 y) showed TFE3 gene rearrangements by FISH, and all 4 of these showed strong positive (3+) TFE3 immunoreactivity using the original validated overnight incubation protocol. Two of these cases had adequate mRNA for RT-PCR analysis, but neither harbored the PSF-TFE3 gene fusion reported earlier in 1 PEComa. In addition, a lung metastasis of a uterine PEComa showed TFE3 gene amplification, an earlier unreported phenomenon. None of the other 24 PEComas (mean patient age 54 y) showed TFE3 gene alterations, though 4 exhibited moderate positive (2+) TFE3 immunoreactivity. In contrast, using an automated stainer, 2 of these 4 cases exhibited strong (3+) TFE3 immunoreactivity. All PEComas with TFE3 genetic alterations immunolabeled strongly for Cathepsin K, similar to other PEComas. In conclusion, a subset of lesions currently classified as PEComas harbors TFE3 gene fusions. Although numbers are small, distinctive features of these cases include a tendency to young age, the absence of association with tuberous sclerosis, predominant alveolar architecture and epithelioid cytology, minimal immunoreactivity for muscle markers, and strong (3+) TFE3 immunoreactivity. Despite significant morphologic and immunohistochemical overlap with other PEComas, PEComas harboring TFE3 gene fusions may represent a distinctive entity. FAU - Argani, Pedram AU - Argani P AD - Department of Pathology and Oncology, The Johns Hopkins Medical Intuitions, Baltimore, MD, USA. pargani@jhmi.edu FAU - Aulmann, Sebastian AU - Aulmann S FAU - Illei, Peter B AU - Illei PB FAU - Netto, George J AU - Netto GJ FAU - Ro, Jae AU - Ro J FAU - Cho, Hyun-yee AU - Cho HY FAU - Dogan, Snjezana AU - Dogan S FAU - Ladanyi, Marc AU - Ladanyi M FAU - Martignoni, Guido AU - Martignoni G FAU - Goldblum, John R AU - Goldblum JR FAU - Weiss, Sharon W AU - Weiss SW LA - eng PT - Journal Article PL - United States TA - Am J Surg Pathol JT - The American journal of surgical pathology JID - 7707904 RN - 0 (Basic Helix-Loop-Helix Leucine Zipper Transcription Factors) RN - 0 (Biomarkers, Tumor) RN - 0 (RNA, Messenger) RN - 0 (TFE3 protein, human) RN - EC 3.4.22.38 (CTSK protein, human) RN - EC 3.4.22.38 (Cathepsin K) SB - IM MH - Adolescent MH - Adult MH - Aged MH - Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/*genetics/metabolism MH - Biomarkers, Tumor/metabolism MH - Cathepsin K/metabolism MH - Child MH - Female MH - *Gene Fusion MH - Gene Rearrangement/*genetics MH - Humans MH - In Situ Hybridization, Fluorescence MH - Male MH - Middle Aged MH - Perivascular Epithelioid Cell Neoplasms/*genetics/metabolism MH - RNA, Messenger/genetics MH - Reverse Transcriptase Polymerase Chain Reaction EDAT- 2010/09/28 06:00 MHDA- 2010/10/15 06:00 CRDT- 2010/09/28 06:00 PHST- 2010/09/28 06:00 [entrez] PHST- 2010/09/28 06:00 [pubmed] PHST- 2010/10/15 06:00 [medline] AID - 00000478-201010000-00001 [pii] AID - 10.1097/PAS.0b013e3181f17ac0 [doi] PST - ppublish SO - Am J Surg Pathol. 2010 Oct;34(10):1395-406. doi: 10.1097/PAS.0b013e3181f17ac0.