PMID- 21245298 OWN - NLM STAT- MEDLINE DCOM- 20110323 LR - 20211203 IS - 1091-6490 (Electronic) IS - 0027-8424 (Print) IS - 0027-8424 (Linking) VI - 108 IP - 5 DP - 2011 Feb 1 TI - Differential regulation of the p73 cistrome by mammalian target of rapamycin reveals transcriptional programs of mesenchymal differentiation and tumorigenesis. PG - 2076-81 LID - 10.1073/pnas.1011936108 [doi] AB - The transcription factor p73 plays critical roles during development and tumorigenesis. It exhibits sequence identity and structural homology with p53, and can engage p53-like tumor-suppressive programs. However, different pathways regulate p53 and p73, and p73 is not mutated in human tumors. Therefore, p73 represents a therapeutic target, and there is a critical need to understand genes and noncoding RNAs regulated by p73 and how they change during treatment regimens. Here, we define the p73 genomic binding profile and demonstrate its modulation by rapamycin, an inhibitor of mammalian target of rapamycin (mTOR) and inducer of p73. Rapamycin selectively increased p73 occupancy at a subset of its binding sites. In addition, multiple determinants of p73 binding, activity, and function were evident, and were modulated by mTOR. We generated an mTOR-p73 signature that is enriched for p73 target genes and miRNAs that are involved in mesenchymal differentiation and tumorigenesis, can classify rhabdomyosarcomas by clinical subtype, and can predict patient outcome. FAU - Rosenbluth, Jennifer M AU - Rosenbluth JM AD - Department of Biochemistry, Center in Molecular Toxicology, and Division of Cancer Biostatistics, Department of Biostatistics, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37232, USA. FAU - Mays, Deborah J AU - Mays DJ FAU - Jiang, Aixiang AU - Jiang A FAU - Shyr, Yu AU - Shyr Y FAU - Pietenpol, Jennifer A AU - Pietenpol JA LA - eng SI - GEO/GSE15719 GR - GM07347/GM/NIGMS NIH HHS/United States GR - R01 CA105436/CA/NCI NIH HHS/United States GR - R01 CA070856/CA/NCI NIH HHS/United States GR - T32 GM007347/GM/NIGMS NIH HHS/United States GR - P30 CA068485/CA/NCI NIH HHS/United States GR - ES00267/ES/NIEHS NIH HHS/United States GR - P30 ES000267/ES/NIEHS NIH HHS/United States GR - CA105436/CA/NCI NIH HHS/United States GR - CA68485/CA/NCI NIH HHS/United States GR - CA70856/CA/NCI NIH HHS/United States PT - Journal Article PT - Research Support, N.I.H., Extramural PT - Research Support, U.S. Gov't, Non-P.H.S. DEP - 20110118 PL - United States TA - Proc Natl Acad Sci U S A JT - Proceedings of the National Academy of Sciences of the United States of America JID - 7505876 RN - 0 (DNA-Binding Proteins) RN - 0 (MicroRNAs) RN - 0 (Nuclear Proteins) RN - 0 (TP73 protein, human) RN - 0 (Tumor Protein p73) RN - 0 (Tumor Suppressor Proteins) RN - EC 2.7.11.1 (TOR Serine-Threonine Kinases) SB - IM MH - *Cell Transformation, Neoplastic MH - DNA-Binding Proteins/*genetics/metabolism MH - Genome, Human MH - Humans MH - Mesoderm/*pathology MH - MicroRNAs/genetics MH - Nuclear Proteins/*genetics/metabolism MH - Protein Binding MH - Rhabdomyosarcoma/classification/genetics/pathology MH - TOR Serine-Threonine Kinases/*genetics MH - *Transcription, Genetic MH - Tumor Protein p73 MH - Tumor Suppressor Proteins/*genetics/metabolism PMC - PMC3033306 COIS- The authors declare no conflict of interest. EDAT- 2011/01/20 06:00 MHDA- 2011/03/24 06:00 PMCR- 2011/08/01 CRDT- 2011/01/20 06:00 PHST- 2011/01/20 06:00 [entrez] PHST- 2011/01/20 06:00 [pubmed] PHST- 2011/03/24 06:00 [medline] PHST- 2011/08/01 00:00 [pmc-release] AID - 1011936108 [pii] AID - 201011936 [pii] AID - 10.1073/pnas.1011936108 [doi] PST - ppublish SO - Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):2076-81. doi: 10.1073/pnas.1011936108. Epub 2011 Jan 18.