PMID- 21468941 OWN - NLM STAT- MEDLINE DCOM- 20110712 LR - 20211020 IS - 1940-6029 (Electronic) IS - 1064-3745 (Print) IS - 1064-3745 (Linking) VI - 728 DP - 2011 TI - Intact-protein analysis system for discovery of serum-based disease biomarkers. PG - 69-85 LID - 10.1007/978-1-61779-068-3_4 [doi] AB - Profiling of serum and plasma proteins has substantial relevance to the discovery of circulating disease biomarkers. However, the extreme complexity and vast dynamic range of protein abundance in serum and plasma present a formidable challenge for protein analysis. Thus, integration of multiple technologies is required to achieve high-resolution and high-sensitivity proteomic analysis of serum or plasma. In this chapter, we describe an orthogonal multidimensional intact-protein analysis system (IPAS) (Wang et al., Mol Cell Proteomics 4:618-625, 2005) coupled with protein tagging (Faca et al., J Proteome Res 5:2009-2018, 2006) to profile the serum and plasma proteomes quantitatively, which we have applied in our biomarker discovery studies (Katayama et al., Genome Med 1:47, 2009; Faca et al., PLoS Med 5:e123, 2008; Zhang et al. Genome Biol 9:R93, 2008). FAU - Wang, Hong AU - Wang H AD - Fred Hutchinson Cancer Research Center, North Seattle, WA, USA. FAU - Hanash, Samir AU - Hanash S LA - eng GR - U01 CA084982/CA/NCI NIH HHS/United States PT - Journal Article PL - United States TA - Methods Mol Biol JT - Methods in molecular biology (Clifton, N.J.) JID - 9214969 RN - 0 (Anions) RN - 0 (Biomarkers) RN - 0 (Blood Proteins) SB - IM MH - Anions MH - Biomarkers/blood MH - Blood Proteins/*analysis MH - Chemical Fractionation MH - Chromatography, High Pressure Liquid MH - Chromatography, Ion Exchange MH - Chromatography, Reverse-Phase MH - *Disease MH - Humans MH - Isotope Labeling MH - Nanotechnology MH - Proteomics/*methods MH - Serum/*chemistry MH - Spectrometry, Mass, Electrospray Ionization MH - Statistics as Topic MH - Temperature PMC - PMC4677997 MID - NIHMS742211 EDAT- 2011/04/07 06:00 MHDA- 2011/07/13 06:00 PMCR- 2015/12/14 CRDT- 2011/04/07 06:00 PHST- 2011/04/07 06:00 [entrez] PHST- 2011/04/07 06:00 [pubmed] PHST- 2011/07/13 06:00 [medline] PHST- 2015/12/14 00:00 [pmc-release] AID - 10.1007/978-1-61779-068-3_4 [doi] PST - ppublish SO - Methods Mol Biol. 2011;728:69-85. doi: 10.1007/978-1-61779-068-3_4.