PMID- 22333393 OWN - NLM STAT- MEDLINE DCOM- 20130207 LR - 20240512 IS - 1465-542X (Electronic) IS - 1465-5411 (Print) IS - 1465-5411 (Linking) VI - 14 IP - 1 DP - 2012 Feb 14 TI - Gene expression profiling of primary male breast cancers reveals two unique subgroups and identifies N-acetyltransferase-1 (NAT1) as a novel prognostic biomarker. PG - R31 AB - INTRODUCTION: Male breast cancer (MBC) is a rare and inadequately characterized disease. The aim of the present study was to characterize MBC tumors transcriptionally, to classify them into comprehensive subgroups, and to compare them with female breast cancer (FBC). METHODS: A total of 66 clinicopathologically well-annotated fresh frozen MBC tumors were analyzed using Illumina Human HT-12 bead arrays, and a tissue microarray with 220 MBC tumors was constructed for validation using immunohistochemistry. Two external gene expression datasets were used for comparison purposes: 37 MBCs and 359 FBCs. RESULTS: Using an unsupervised approach, we classified the MBC tumors into two subgroups, luminal M1 and luminal M2, respectively, with differences in tumor biological features and outcome, and which differed from the intrinsic subgroups described in FBC. The two subgroups were recapitulated in the external MBC dataset. Luminal M2 tumors were characterized by high expression of immune response genes and genes associated with estrogen receptor (ER) signaling. Luminal M1 tumors, on the other hand, despite being ER positive by immunohistochemistry showed a lower correlation to genes associated with ER signaling and displayed a more aggressive phenotype and worse prognosis. Validation of two of the most differentially expressed genes, class 1 human leukocyte antigen (HLA) and the metabolizing gene N-acetyltransferase-1 (NAT1), respectively, revealed significantly better survival associated with high expression of both markers (HLA, hazard ratio (HR) 3.6, P = 0.002; NAT1, HR 2.5, P = 0.033). Importantly, NAT1 remained significant in a multivariate analysis (HR 2.8, P = 0.040) and may thus be a novel prognostic marker in MBC. CONCLUSIONS: We have detected two unique and stable subgroups of MBC with differences in tumor biological features and outcome. They differ from the widely acknowledged intrinsic subgroups of FBC. As such, they may constitute two novel subgroups of breast cancer, occurring exclusively in men, and which may consequently require novel treatment approaches. Finally, we identified NAT1 as a possible prognostic biomarker for MBC, as suggested by NAT1 positivity corresponding to better outcome. FAU - Johansson, Ida AU - Johansson I AD - Department of Oncology, Clinical Sciences, Lund University, Barngatan 2B, SE 22185 Lund, Sweden. FAU - Nilsson, Cecilia AU - Nilsson C FAU - Berglund, Pontus AU - Berglund P FAU - Lauss, Martin AU - Lauss M FAU - Ringner, Markus AU - Ringner M FAU - Olsson, Hakan AU - Olsson H FAU - Luts, Lena AU - Luts L FAU - Sim, Edith AU - Sim E FAU - Thorstensson, Sten AU - Thorstensson S FAU - Fjallskog, Marie-Louise AU - Fjallskog ML FAU - Hedenfalk, Ingrid AU - Hedenfalk I LA - eng PT - Comparative Study PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20120214 PL - England TA - Breast Cancer Res JT - Breast cancer research : BCR JID - 100927353 RN - 0 (Biomarkers, Tumor) RN - 0 (Isoenzymes) RN - EC 2.3.1.5 (Arylamine N-Acetyltransferase) RN - EC 2.3.1.5 (N-acetyltransferase 1) SB - IM MH - Adult MH - Aged MH - Aged, 80 and over MH - Arylamine N-Acetyltransferase/genetics/*metabolism MH - Biomarkers, Tumor/genetics/*metabolism MH - Breast Neoplasms, Male/classification/diagnosis/*enzymology/mortality MH - Carcinoma, Ductal, Breast/classification/diagnosis/*enzymology/mortality MH - Carcinoma, Intraductal, Noninfiltrating/classification/diagnosis/*enzymology/mortality MH - Cluster Analysis MH - Female MH - Gene Expression Profiling MH - Humans MH - Isoenzymes/genetics/*metabolism MH - Kaplan-Meier Estimate MH - Male MH - Middle Aged MH - Multivariate Analysis MH - Oligonucleotide Array Sequence Analysis MH - Principal Component Analysis MH - Prognosis MH - Statistics, Nonparametric MH - Tissue Array Analysis MH - *Transcriptome MH - Young Adult PMC - PMC3496149 EDAT- 2012/02/16 06:00 MHDA- 2013/02/08 06:00 PMCR- 2012/02/14 CRDT- 2012/02/16 06:00 PHST- 2011/08/04 00:00 [received] PHST- 2012/01/09 00:00 [revised] PHST- 2012/02/14 00:00 [accepted] PHST- 2012/02/16 06:00 [entrez] PHST- 2012/02/16 06:00 [pubmed] PHST- 2013/02/08 06:00 [medline] PHST- 2012/02/14 00:00 [pmc-release] AID - bcr3116 [pii] AID - 10.1186/bcr3116 [doi] PST - epublish SO - Breast Cancer Res. 2012 Feb 14;14(1):R31. doi: 10.1186/bcr3116.