PMID- 22666422 OWN - NLM STAT- MEDLINE DCOM- 20121029 LR - 20211021 IS - 1932-6203 (Electronic) IS - 1932-6203 (Linking) VI - 7 IP - 5 DP - 2012 TI - Genome-wide characterization of menin-dependent H3K4me3 reveals a specific role for menin in the regulation of genes implicated in MEN1-like tumors. PG - e37952 LID - 10.1371/journal.pone.0037952 [doi] LID - e37952 AB - Inactivating mutations in the MEN1 gene predisposing to the multiple endocrine neoplasia type 1 (MEN1) syndrome can also cause sporadic pancreatic endocrine tumors. MEN1 encodes menin, a subunit of MLL1/MLL2-containing histone methyltransferase complexes that trimethylate histone H3 at lysine 4 (H3K4me3). The importance of menin-dependent H3K4me3 in normal and transformed pancreatic endocrine cells is unclear. To study the role of menin-dependent H3K4me3, we performed in vitro differentiation of wild-type as well as menin-null mouse embryonic stem cells (mESCs) into pancreatic islet-like endocrine cells (PILECs). Gene expression analysis and genome-wide H3K4me3 ChIP-Seq profiling in wild-type and menin-null mESCs and PILECs revealed menin-dependent H3K4me3 at the imprinted Dlk1-Meg3 locus in mESCs, and all four Hox loci in differentiated PILECs. Specific and significant loss of H3K4me3 and gene expression was observed for genes within the imprinted Dlk1-Meg3 locus in menin-null mESCs and the Hox loci in menin-null PILECs. Given that the reduced expression of genes within the DLK1-MEG3 locus and the HOX loci is associated with MEN1-like sporadic tumors, our data suggests a possible role for menin-dependent H3K4me3 at these genes in the initiation and progression of sporadic pancreatic endocrine tumors. Furthermore, our investigation also demonstrates that menin-null mESCs can be differentiated in vitro into islet-like endocrine cells, underscoring the utility of menin-null mESC-derived specialized cell types for genome-wide high-throughput studies. FAU - Agarwal, Sunita K AU - Agarwal SK AD - Metabolic Diseases Branch, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, United States of America. SunitaA@mail.nih.gov FAU - Jothi, Raja AU - Jothi R LA - eng SI - GEO/GSE37776 GR - ZIA DK075035/Intramural NIH HHS/United States GR - ZIA ES102625/Intramural NIH HHS/United States GR - 1ZIADK075035-03/PHS HHS/United States GR - 1ZIAES102625-03/PHS HHS/United States PT - Journal Article PT - Research Support, N.I.H., Extramural DEP - 20120530 PL - United States TA - PLoS One JT - PloS one JID - 101285081 RN - 0 (Histones) RN - 0 (Men1 protein, mouse) RN - 0 (Proto-Oncogene Proteins) SB - IM MH - Animals MH - Cell Differentiation MH - Embryonic Stem Cells/cytology/metabolism MH - Endocrine Cells/cytology/metabolism MH - Gene Deletion MH - *Gene Expression Profiling MH - *Gene Expression Regulation, Neoplastic MH - Genes, Homeobox/genetics MH - Genetic Loci/genetics MH - *Genomics MH - Histones/*chemistry/*metabolism MH - Humans MH - Islets of Langerhans/cytology MH - Methylation MH - Mice MH - Multiple Endocrine Neoplasia Type 1/*genetics/metabolism MH - Pancreatic Neoplasms/genetics/metabolism MH - Promoter Regions, Genetic/genetics MH - Proto-Oncogene Proteins/deficiency/genetics/*metabolism PMC - PMC3364203 COIS- Competing Interests: The authors have declared that co-author Raja Jothi is a PLoS ONE Editorial Board member, and that this does not alter the authors' adherence to all the PLoS ONE policies on sharing data and materials. EDAT- 2012/06/06 06:00 MHDA- 2012/10/30 06:00 PMCR- 2012/05/30 CRDT- 2012/06/06 06:00 PHST- 2012/02/09 00:00 [received] PHST- 2012/04/30 00:00 [accepted] PHST- 2012/06/06 06:00 [entrez] PHST- 2012/06/06 06:00 [pubmed] PHST- 2012/10/30 06:00 [medline] PHST- 2012/05/30 00:00 [pmc-release] AID - PONE-D-12-04364 [pii] AID - 10.1371/journal.pone.0037952 [doi] PST - ppublish SO - PLoS One. 2012;7(5):e37952. doi: 10.1371/journal.pone.0037952. Epub 2012 May 30.