PMID- 22892582 OWN - NLM STAT- MEDLINE DCOM- 20130109 LR - 20211203 IS - 1463-9084 (Electronic) IS - 1463-9076 (Linking) VI - 14 IP - 36 DP - 2012 Sep 28 TI - Identifying the sarco(endo)plasmic reticulum Ca2+ ATPase (SERCA) as a potential target for hypericin--a theoretical study. PG - 12637-46 LID - 10.1039/c2cp42237a [doi] AB - The exact cellular target for the potent anti-cancer agent hypericin has not yet been determined; this thus encourages the application of computational chemistry tools to be employed in order to provide insights that can be employed in further drug development studies. In the present study computational docking and molecular dynamics simulations are applied to investigate possible interactions between hypericin and the Ca(2+) pump SERCA as proposed in the literature. Hypericin was found to bind strongly both in pockets within the transmembrane region and in the cytosolic region of the protein, although the two studied isoforms of SERCA differ slightly in their preferred binding sites. The calculated binding energies for hypericin in the four investigated sites were of the same magnitude as for thapsigargin (TG), the most potent SERCA inhibitor, or in the range between TG and di-tert-butylhydroquinone (BHQ), which is also known to possess inhibitory activity. The hydrophobic character of hypericin indicates that the molecule initially binds in the ER membrane from which it diffuses into the transmembrane region of the protein and to binding pockets therein. The transmembrane TG and BHQ binding pockets provide suitable locations for hypericin as they allow for favourable interactions with the lipid tails that surround these. High binding energies were noted for hypericin in these pockets and are expected to constitute highly possible binding sites due to their accessibility from the ER membrane. Hypericin most likely binds to both isoforms of SERCA and acts as an inhibitor or, under light irradiation, as a singlet oxygen generator that in turn degrades the protein or induces lipid peroxidation. FAU - Eriksson, Emma S E AU - Eriksson ES AD - Department of Chemistry and Molecular Biology, University of Gothenburg, 412 96 Goteborg, Sweden. emma.eriksson@chem.gu.se FAU - Eriksson, Leif A AU - Eriksson LA LA - eng PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20120815 PL - England TA - Phys Chem Chem Phys JT - Physical chemistry chemical physics : PCCP JID - 100888160 RN - 0 (Anthracenes) RN - 0 (Antineoplastic Agents) RN - 0 (Enzyme Inhibitors) RN - 0 (Hydroquinones) RN - 26XK13B61B (2,5-di-tert-butylhydroquinone) RN - 5QD5427UN7 (Perylene) RN - 67526-95-8 (Thapsigargin) RN - 7V2F1075HD (hypericin) RN - EC 3.6.3.8 (Sarcoplasmic Reticulum Calcium-Transporting ATPases) SB - IM MH - Anthracenes MH - Antineoplastic Agents/*chemistry/pharmacology MH - Enzyme Inhibitors/chemistry/pharmacology MH - Humans MH - Hydroquinones/chemistry/pharmacology MH - Models, Molecular MH - *Molecular Dynamics Simulation MH - Molecular Structure MH - Perylene/*analogs & derivatives/chemistry/pharmacology MH - Sarcoplasmic Reticulum/*enzymology/metabolism MH - Sarcoplasmic Reticulum Calcium-Transporting ATPases/antagonists & inhibitors/*chemistry/metabolism MH - Structure-Activity Relationship MH - Thapsigargin/chemistry/pharmacology EDAT- 2012/08/16 06:00 MHDA- 2013/01/10 06:00 CRDT- 2012/08/16 06:00 PHST- 2012/08/16 06:00 [entrez] PHST- 2012/08/16 06:00 [pubmed] PHST- 2013/01/10 06:00 [medline] AID - 10.1039/c2cp42237a [doi] PST - ppublish SO - Phys Chem Chem Phys. 2012 Sep 28;14(36):12637-46. doi: 10.1039/c2cp42237a. Epub 2012 Aug 15.