PMID- 23083746
OWN - NLM
STAT- MEDLINE
DCOM- 20130723
LR  - 20171116
IS  - 1618-0623 (Electronic)
IS  - 0944-5013 (Linking)
VI  - 168
IP  - 3
DP  - 2013 Mar 30
TI  - Microbial population index and community structure in saline-alkaline soil using 
      gene targeted metagenomics.
PG  - 165-73
LID - S0944-5013(12)00105-X [pii]
LID - 10.1016/j.micres.2012.09.005 [doi]
AB  - Population indices of bacteria and archaea were investigated from saline-alkaline 
      soil and a possible microbe-environment pattern was established using gene 
      targeted metagenomics. Clone libraries were constructed using 16S rRNA and 
      functional gene(s) involved in carbon fixation (cbbL), nitrogen fixation (nifH), 
      ammonia oxidation (amoA) and sulfur metabolism (apsA). Molecular phylogeny 
      revealed the dominance of Actinobacteria, Firmicutes and Proteobacteria along 
      with archaeal members of Halobacteraceae. The library consisted of novel 
      bacterial (20%) and archaeal (38%) genera showing </=95% similarity to previously 
      retrieved sequences. Phylogenetic analysis indicated ability of inhabitant to 
      survive in stress condition. The 16S rRNA gene libraries contained novel gene 
      sequences and were distantly homologous with cultured bacteria. Functional gene 
      libraries were found unique and most of the clones were distantly related to 
      Proteobacteria, while clones of nifH gene library also showed homology with 
      Cyanobacteria and Firmicutes. Quantitative real-time PCR exhibited that bacterial 
      abundance was two orders of magnitude higher than archaeal. The gene(s) 
      quantification indicated the size of the functional guilds harboring relevant key 
      genes. The study provides insights on microbial ecology and different metabolic 
      interactions occurring in saline-alkaline soil, possessing phylogenetically 
      diverse groups of bacteria and archaea, which may be explored further for gene 
      cataloging and metabolic profiling.
CI  - Copyright (c) 2012 Elsevier GmbH. All rights reserved.
FAU - Keshri, Jitendra
AU  - Keshri J
AD  - Discipline of Marine Biotechnology and Ecology, CSIR-Central Salt and Marine 
      Chemicals Research Institute (CSMCRI), G. B. Marg, Bhavnagar 364002, Gujarat, 
      India.
FAU - Mishra, Avinash
AU  - Mishra A
FAU - Jha, Bhavanath
AU  - Jha B
LA  - eng
SI  - GENBANK/JN037852
SI  - GENBANK/JN037853
SI  - GENBANK/JN037854
SI  - GENBANK/JN037855
SI  - GENBANK/JN037856
SI  - GENBANK/JN037857
SI  - GENBANK/JN037858
SI  - GENBANK/JN037859
SI  - GENBANK/JN037860
SI  - GENBANK/JN037861
SI  - GENBANK/JN037862
SI  - GENBANK/JN037863
SI  - GENBANK/JN037864
SI  - GENBANK/JN037865
SI  - GENBANK/JN037866
SI  - GENBANK/JN037867
SI  - GENBANK/JN037868
SI  - GENBANK/JN037869
SI  - GENBANK/JN037870
SI  - GENBANK/JN037871
SI  - GENBANK/JN037872
SI  - GENBANK/JN037873
SI  - GENBANK/JN037874
SI  - GENBANK/JN037875
SI  - GENBANK/JN037876
SI  - GENBANK/JN037877
SI  - GENBANK/JN037878
SI  - GENBANK/JN037879
SI  - GENBANK/JN037880
SI  - GENBANK/JN037881
SI  - GENBANK/JN037882
SI  - GENBANK/JN037883
SI  - GENBANK/JN037884
SI  - GENBANK/JN037885
SI  - GENBANK/JN037886
SI  - GENBANK/JN037887
SI  - GENBANK/JN037888
SI  - GENBANK/JN037889
SI  - GENBANK/JN037890
SI  - GENBANK/JN037891
SI  - GENBANK/JN037892
SI  - GENBANK/JN037893
SI  - GENBANK/JN037894
SI  - GENBANK/JN037895
SI  - GENBANK/JN037896
SI  - GENBANK/JN037897
SI  - GENBANK/JN037898
SI  - GENBANK/JN037899
SI  - GENBANK/JN037900
SI  - GENBANK/JN037901
SI  - GENBANK/JN037902
SI  - GENBANK/JN037903
SI  - GENBANK/JN037904
SI  - GENBANK/JN037905
SI  - GENBANK/JN037906
SI  - GENBANK/JN037907
SI  - GENBANK/JN037908
SI  - GENBANK/JN037909
SI  - GENBANK/JN037910
SI  - GENBANK/JN037911
SI  - GENBANK/JN037912
SI  - GENBANK/JN037913
SI  - GENBANK/JN037914
SI  - GENBANK/JN037915
SI  - GENBANK/JN037916
SI  - GENBANK/JN037917
SI  - GENBANK/JN037918
SI  - GENBANK/JN037919
SI  - GENBANK/JN037920
SI  - GENBANK/JN037921
SI  - GENBANK/JN037922
SI  - GENBANK/JN037923
SI  - GENBANK/JN037924
SI  - GENBANK/JN037925
SI  - GENBANK/JN037926
SI  - GENBANK/JN037927
SI  - GENBANK/JN037928
SI  - GENBANK/JN037929
SI  - GENBANK/JN037930
SI  - GENBANK/JN037931
SI  - GENBANK/JN037932
SI  - GENBANK/JN037933
SI  - GENBANK/JN037934
SI  - GENBANK/JN037935
SI  - GENBANK/JN037936
SI  - GENBANK/JN037937
SI  - GENBANK/JN037938
SI  - GENBANK/JN037939
SI  - GENBANK/JN037940
SI  - GENBANK/JN037941
SI  - GENBANK/JN037942
SI  - GENBANK/JN037943
SI  - GENBANK/JN037944
SI  - GENBANK/JN037945
SI  - GENBANK/JN037946
SI  - GENBANK/JN037947
SI  - GENBANK/JN037948
SI  - GENBANK/JN037949
SI  - GENBANK/JN037950
SI  - GENBANK/JN037951
SI  - GENBANK/JN037952
SI  - GENBANK/JN037953
SI  - GENBANK/JN037954
SI  - GENBANK/JN037955
SI  - GENBANK/JN037956
SI  - GENBANK/JN037957
SI  - GENBANK/JN037958
SI  - GENBANK/JN037959
SI  - GENBANK/JN037960
SI  - GENBANK/JN037961
SI  - GENBANK/JN037962
SI  - GENBANK/JN037963
SI  - GENBANK/JN037964
SI  - GENBANK/JN037965
SI  - GENBANK/JN037966
SI  - GENBANK/JN037967
SI  - GENBANK/JN037968
SI  - GENBANK/JN037969
SI  - GENBANK/JN037970
SI  - GENBANK/JN037971
SI  - GENBANK/JN037972
SI  - GENBANK/JN037973
SI  - GENBANK/JN037974
SI  - GENBANK/JN037975
SI  - GENBANK/JN037976
SI  - GENBANK/JN037977
SI  - GENBANK/JN037978
SI  - GENBANK/JN037979
SI  - GENBANK/JN037980
SI  - GENBANK/JN037981
SI  - GENBANK/JN037982
SI  - GENBANK/JN037983
SI  - GENBANK/JN037984
SI  - GENBANK/JN037985
SI  - GENBANK/JN037986
SI  - GENBANK/JN037987
SI  - GENBANK/JN037988
SI  - GENBANK/JN037989
SI  - GENBANK/JN037990
SI  - GENBANK/JN037991
SI  - GENBANK/JN037992
SI  - GENBANK/JN037993
SI  - GENBANK/JN037994
SI  - GENBANK/JN037995
SI  - GENBANK/JN037996
SI  - GENBANK/JN037997
SI  - GENBANK/JN037998
SI  - GENBANK/JN037999
SI  - GENBANK/JN038000
SI  - GENBANK/JN038001
SI  - GENBANK/JN038002
SI  - GENBANK/JN038003
SI  - GENBANK/JN038004
SI  - GENBANK/JN038005
SI  - GENBANK/JN038006
SI  - GENBANK/JN038007
SI  - GENBANK/JN038008
SI  - GENBANK/JN038009
SI  - GENBANK/JN038010
SI  - GENBANK/JN038011
SI  - GENBANK/JN038012
SI  - GENBANK/JN038013
SI  - GENBANK/JN038014
SI  - GENBANK/JN038015
SI  - GENBANK/JN038016
SI  - GENBANK/JN038017
SI  - GENBANK/JN038018
SI  - GENBANK/JN038019
SI  - GENBANK/JN038020
SI  - GENBANK/JN038021
SI  - GENBANK/JN038022
SI  - GENBANK/JN038023
SI  - GENBANK/JN038024
SI  - GENBANK/JN038025
SI  - GENBANK/JN038026
SI  - GENBANK/JN038027
SI  - GENBANK/JN038028
SI  - GENBANK/JN038029
SI  - GENBANK/JN038030
SI  - GENBANK/JN038031
SI  - GENBANK/JN038032
SI  - GENBANK/JN038033
SI  - GENBANK/JN038034
SI  - GENBANK/JN038035
SI  - GENBANK/JN038036
SI  - GENBANK/JN038037
SI  - GENBANK/JN038038
SI  - GENBANK/JN038039
SI  - GENBANK/JN038040
SI  - GENBANK/JN038041
SI  - GENBANK/JN038042
SI  - GENBANK/JN038043
SI  - GENBANK/JN038044
SI  - GENBANK/JN038045
SI  - GENBANK/JN038046
SI  - GENBANK/JN162447
SI  - GENBANK/JN162448
SI  - GENBANK/JN162449
SI  - GENBANK/JN162450
SI  - GENBANK/JN162451
SI  - GENBANK/JN162452
SI  - GENBANK/JN162453
SI  - GENBANK/JN162454
SI  - GENBANK/JN162455
SI  - GENBANK/JN162456
SI  - GENBANK/JN162457
SI  - GENBANK/JN162458
SI  - GENBANK/JN162459
SI  - GENBANK/JN162460
SI  - GENBANK/JN162461
SI  - GENBANK/JN162462
SI  - GENBANK/JN162463
SI  - GENBANK/JN162464
SI  - GENBANK/JN162465
SI  - GENBANK/JN162466
SI  - GENBANK/JN162467
SI  - GENBANK/JN162468
SI  - GENBANK/JN162469
SI  - GENBANK/JN162470
SI  - GENBANK/JN162471
SI  - GENBANK/JN162472
SI  - GENBANK/JN162473
SI  - GENBANK/JN162474
SI  - GENBANK/JN162475
SI  - GENBANK/JN162476
SI  - GENBANK/JN162477
SI  - GENBANK/JN162478
SI  - GENBANK/JN162479
SI  - GENBANK/JN162480
SI  - GENBANK/JN162481
SI  - GENBANK/JN162482
SI  - GENBANK/JN162483
SI  - GENBANK/JN162484
SI  - GENBANK/JN162485
SI  - GENBANK/JN162486
SI  - GENBANK/JN162487
SI  - GENBANK/JN162488
SI  - GENBANK/JN162489
SI  - GENBANK/JN162490
SI  - GENBANK/JN162491
SI  - GENBANK/JN162492
SI  - GENBANK/JN162493
SI  - GENBANK/JN162494
SI  - GENBANK/JN162495
SI  - GENBANK/JN162496
SI  - GENBANK/JN162497
SI  - GENBANK/JN162498
SI  - GENBANK/JN162499
SI  - GENBANK/JN162500
SI  - GENBANK/JN162501
SI  - GENBANK/JN162502
SI  - GENBANK/JN162503
SI  - GENBANK/JN162504
SI  - GENBANK/JN162505
SI  - GENBANK/JN162506
SI  - GENBANK/JN162507
SI  - GENBANK/JN162508
SI  - GENBANK/JN162509
SI  - GENBANK/JN162510
SI  - GENBANK/JN162511
SI  - GENBANK/JN162512
SI  - GENBANK/JN162513
SI  - GENBANK/JN162514
SI  - GENBANK/JN162515
SI  - GENBANK/JN162516
SI  - GENBANK/JN162517
SI  - GENBANK/JN162518
SI  - GENBANK/JN162519
SI  - GENBANK/JN162520
SI  - GENBANK/JN162521
SI  - GENBANK/JN162522
SI  - GENBANK/JN162523
SI  - GENBANK/JN162524
SI  - GENBANK/JN162525
SI  - GENBANK/JN162526
SI  - GENBANK/JN162527
SI  - GENBANK/JN162528
SI  - GENBANK/JN162529
SI  - GENBANK/JN162530
SI  - GENBANK/JN162531
SI  - GENBANK/JN162532
SI  - GENBANK/JN162533
SI  - GENBANK/JN162534
SI  - GENBANK/JN162535
SI  - GENBANK/JN162536
SI  - GENBANK/JN162537
SI  - GENBANK/JN162538
SI  - GENBANK/JN162539
SI  - GENBANK/JN162540
SI  - GENBANK/JN162541
SI  - GENBANK/JN162542
SI  - GENBANK/JN162543
SI  - GENBANK/JN162544
SI  - GENBANK/JN162545
SI  - GENBANK/JN162546
SI  - GENBANK/JN162547
SI  - GENBANK/JN162548
SI  - GENBANK/JN162549
SI  - GENBANK/JN162550
SI  - GENBANK/JN162551
SI  - GENBANK/JN162552
SI  - GENBANK/JN162553
SI  - GENBANK/JN162554
SI  - GENBANK/JN162555
SI  - GENBANK/JN162556
SI  - GENBANK/JN162557
SI  - GENBANK/JN162558
SI  - GENBANK/JN162559
SI  - GENBANK/JN162560
SI  - GENBANK/JN162561
SI  - GENBANK/JN162562
SI  - GENBANK/JN162563
SI  - GENBANK/JN162564
SI  - GENBANK/JN162565
SI  - GENBANK/JN162566
SI  - GENBANK/JN162567
SI  - GENBANK/JN162568
SI  - GENBANK/JN162569
SI  - GENBANK/JN162570
SI  - GENBANK/JN162571
SI  - GENBANK/JN162572
SI  - GENBANK/JN162573
SI  - GENBANK/JN162574
SI  - GENBANK/JN162575
SI  - GENBANK/JN162576
SI  - GENBANK/JN162577
SI  - GENBANK/JN162578
SI  - GENBANK/JN162579
SI  - GENBANK/JN162580
SI  - GENBANK/JN162581
SI  - GENBANK/JN162582
SI  - GENBANK/JN162583
SI  - GENBANK/JN162584
SI  - GENBANK/JN162585
SI  - GENBANK/JN162586
SI  - GENBANK/JN162587
SI  - GENBANK/JN162588
SI  - GENBANK/JN162589
SI  - GENBANK/JN162590
SI  - GENBANK/JN162591
SI  - GENBANK/JN162592
SI  - GENBANK/JN162593
SI  - GENBANK/JN162594
SI  - GENBANK/JN162595
SI  - GENBANK/JN162596
SI  - GENBANK/JN162597
SI  - GENBANK/JN162598
SI  - GENBANK/JN162599
SI  - GENBANK/JN162600
SI  - GENBANK/JN162601
SI  - GENBANK/JN162602
SI  - GENBANK/JN162603
SI  - GENBANK/JN162604
SI  - GENBANK/JN162605
SI  - GENBANK/JN162606
SI  - GENBANK/JN162607
SI  - GENBANK/JN162608
SI  - GENBANK/JN162609
SI  - GENBANK/JN162610
SI  - GENBANK/JN162611
SI  - GENBANK/JN162612
SI  - GENBANK/JN162613
SI  - GENBANK/JN162614
SI  - GENBANK/JN162615
SI  - GENBANK/JN162616
SI  - GENBANK/JN162617
SI  - GENBANK/JN162618
SI  - GENBANK/JN162619
SI  - GENBANK/JN162620
SI  - GENBANK/JN162621
SI  - GENBANK/JN162622
SI  - GENBANK/JN162623
SI  - GENBANK/JN162624
SI  - GENBANK/JN162625
SI  - GENBANK/JN162626
SI  - GENBANK/JN162627
SI  - GENBANK/JN162628
SI  - GENBANK/JN162629
SI  - GENBANK/JN162630
SI  - GENBANK/JN162631
SI  - GENBANK/JN162632
SI  - GENBANK/JN162633
SI  - GENBANK/JN162634
SI  - GENBANK/JN162635
SI  - GENBANK/JN162636
SI  - GENBANK/JN162637
SI  - GENBANK/JN162638
SI  - GENBANK/JN162639
SI  - GENBANK/JN162640
SI  - GENBANK/JN162641
SI  - GENBANK/JN162642
SI  - GENBANK/JN162643
SI  - GENBANK/JN162644
SI  - GENBANK/JN162645
SI  - GENBANK/JN162646
SI  - GENBANK/JN162647
SI  - GENBANK/JN162648
SI  - GENBANK/JN162649
SI  - GENBANK/JN162650
SI  - GENBANK/JN162651
SI  - GENBANK/JN162652
SI  - GENBANK/JN162653
SI  - GENBANK/JN162654
SI  - GENBANK/JN162655
SI  - GENBANK/JN162656
SI  - GENBANK/JN162657
SI  - GENBANK/JN162658
SI  - GENBANK/JN162659
SI  - GENBANK/JN162660
SI  - GENBANK/JN162661
SI  - GENBANK/JN162662
SI  - GENBANK/JN162663
SI  - GENBANK/JN162664
SI  - GENBANK/JN162665
SI  - GENBANK/JN162666
SI  - GENBANK/JN162667
SI  - GENBANK/JN162668
SI  - GENBANK/JN162669
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
DEP - 20121016
PL  - Germany
TA  - Microbiol Res
JT  - Microbiological research
JID - 9437794
RN  - 0 (Archaeal Proteins)
RN  - 0 (Bacterial Proteins)
RN  - 0 (DNA, Archaeal)
RN  - 0 (DNA, Bacterial)
RN  - 0 (DNA, Ribosomal)
RN  - 0 (RNA, Archaeal)
RN  - 0 (RNA, Bacterial)
RN  - 0 (RNA, Ribosomal, 16S)
RN  - 0 (Soil)
SB  - IM
MH  - Archaea/*classification/genetics
MH  - Archaeal Proteins/genetics
MH  - Bacteria/*classification/genetics
MH  - Bacterial Proteins/genetics
MH  - *Biota
MH  - Cluster Analysis
MH  - DNA, Archaeal/chemistry/genetics
MH  - DNA, Bacterial/chemistry/genetics
MH  - DNA, Ribosomal/chemistry/genetics
MH  - Genes, rRNA
MH  - Hydrogen-Ion Concentration
MH  - *Metagenomics
MH  - Molecular Sequence Data
MH  - Phylogeny
MH  - RNA, Archaeal/genetics
MH  - RNA, Bacterial/genetics
MH  - RNA, Ribosomal, 16S/genetics
MH  - Salinity
MH  - Sequence Analysis, DNA
MH  - Sequence Homology, Nucleic Acid
MH  - Soil/*chemistry
MH  - *Soil Microbiology
EDAT- 2012/10/23 06:00
MHDA- 2013/07/24 06:00
CRDT- 2012/10/23 06:00
PHST- 2012/06/11 00:00 [received]
PHST- 2012/08/20 00:00 [revised]
PHST- 2012/09/17 00:00 [accepted]
PHST- 2012/10/23 06:00 [entrez]
PHST- 2012/10/23 06:00 [pubmed]
PHST- 2013/07/24 06:00 [medline]
AID - S0944-5013(12)00105-X [pii]
AID - 10.1016/j.micres.2012.09.005 [doi]
PST - ppublish
SO  - Microbiol Res. 2013 Mar 30;168(3):165-73. doi: 10.1016/j.micres.2012.09.005. Epub 
      2012 Oct 16.