PMID- 23390378 OWN - NLM STAT- MEDLINE DCOM- 20130530 LR - 20211021 IS - 1553-7404 (Electronic) IS - 1553-7390 (Print) IS - 1553-7390 (Linking) VI - 9 IP - 1 DP - 2013 TI - Telomerase-null survivor screening identifies novel telomere recombination regulators. PG - e1003208 LID - 10.1371/journal.pgen.1003208 [doi] LID - e1003208 AB - Telomeres are protein-DNA structures found at the ends of linear chromosomes and are crucial for genome integrity. Telomeric DNA length is primarily maintained by the enzyme telomerase. Cells lacking telomerase will undergo senescence when telomeres become critically short. In Saccharomyces cerevisiae, a very small percentage of cells lacking telomerase can remain viable by lengthening telomeres via two distinct homologous recombination pathways. These "survivor" cells are classified as either Type I or Type II, with each class of survivor possessing distinct telomeric DNA structures and genetic requirements. To elucidate the regulatory pathways contributing to survivor generation, we knocked out the telomerase RNA gene TLC1 in 280 telomere-length-maintenance (TLM) gene mutants and examined telomere structures in post-senescent survivors. We uncovered new functional roles for 10 genes that affect the emerging ratio of Type I versus Type II survivors and 22 genes that are required for Type II survivor generation. We further verified that Pif1 helicase was required for Type I recombination and that the INO80 chromatin remodeling complex greatly affected the emerging frequency of Type I survivors. Finally, we found the Rad6-mediated ubiquitination pathway and the KEOPS complex were required for Type II recombination. Our data provide an independent line of evidence supporting the idea that these genes play important roles in telomere dynamics. FAU - Hu, Yan AU - Hu Y AD - The State Key Laboratory of Molecular Biology, Shanghai Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China. FAU - Tang, Hong-Bo AU - Tang HB FAU - Liu, Ning-Ning AU - Liu NN FAU - Tong, Xia-Jing AU - Tong XJ FAU - Dang, Wei AU - Dang W FAU - Duan, Yi-Min AU - Duan YM FAU - Fu, Xiao-Hong AU - Fu XH FAU - Zhang, Yang AU - Zhang Y FAU - Peng, Jing AU - Peng J FAU - Meng, Fei-Long AU - Meng FL FAU - Zhou, Jin-Qiu AU - Zhou JQ LA - eng PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20130117 PL - United States TA - PLoS Genet JT - PLoS genetics JID - 101239074 RN - 0 (Fungal Proteins) RN - 0 (Saccharomyces cerevisiae Proteins) RN - 0 (telomerase RNA) RN - 63231-63-0 (RNA) RN - EC 2.7.7.49 (Telomerase) RN - EC 3.6.1.- (PIF1 protein, S cerevisiae) RN - EC 3.6.4.- (DNA Helicases) SB - IM MH - Chromosomes/genetics MH - *DNA Helicases/genetics/metabolism MH - Fungal Proteins/genetics/metabolism MH - Genomic Instability MH - *Homologous Recombination MH - RNA/genetics/metabolism MH - *Saccharomyces cerevisiae/genetics/metabolism MH - *Saccharomyces cerevisiae Proteins/genetics/metabolism MH - Signal Transduction MH - Telomerase/*genetics/metabolism MH - Telomere/genetics MH - Telomere Homeostasis/genetics MH - Ubiquitination PMC - PMC3547846 COIS- The authors have declared that no competing interests exist. EDAT- 2013/02/08 06:00 MHDA- 2013/06/01 06:00 PMCR- 2013/01/01 CRDT- 2013/02/08 06:00 PHST- 2012/02/17 00:00 [received] PHST- 2012/11/12 00:00 [accepted] PHST- 2013/02/08 06:00 [entrez] PHST- 2013/02/08 06:00 [pubmed] PHST- 2013/06/01 06:00 [medline] PHST- 2013/01/01 00:00 [pmc-release] AID - PGENETICS-D-12-00408 [pii] AID - 10.1371/journal.pgen.1003208 [doi] PST - ppublish SO - PLoS Genet. 2013;9(1):e1003208. doi: 10.1371/journal.pgen.1003208. Epub 2013 Jan 17.