PMID- 23510415
OWN - NLM
STAT- MEDLINE
DCOM- 20130904
LR  - 20220321
IS  - 1399-0039 (Electronic)
IS  - 0001-2815 (Print)
IS  - 0001-2815 (Linking)
VI  - 81
IP  - 4
DP  - 2013 Apr
TI  - Common and well-documented HLA alleles: 2012 update to the CWD catalogue.
PG  - 194-203
LID - 10.1111/tan.12093 [doi]
AB  - We have updated the catalogue of common and well-documented (CWD) human leukocyte 
      antigen (HLA) alleles to reflect current understanding of the prevalence of 
      specific allele sequences. The original CWD catalogue designated 721 alleles at 
      the HLA-A, -B, -C, -DRB1, -DRB3/4/5, -DQA1, -DQB1, and -DPB1 loci in IMGT 
      (IMmunoGeneTics)/HLA Database release 2.15.0 as being CWD. The updated CWD 
      catalogue designates 1122 alleles at the HLA-A, -B, -C, -DRB1, -DRB3/4/5, -DQA1, 
      -DQB1, -DPA1 and -DPB1 loci as being CWD, and represents 14.3% of the HLA alleles 
      in IMGT/HLA Database release 3.9.0. In particular, we identified 415 of these 
      alleles as being 'common' (having known frequencies) and 707 as being 
      'well-documented' on the basis of ~140,000 sequence-based typing observations and 
      available HLA haplotype data. Using these allele prevalence data, we have also 
      assigned CWD status to specific G and P designations. We identified 147/151 G 
      groups and 290/415 P groups as being CWD. The CWD catalogue will be updated on a 
      regular basis moving forward, and will incorporate changes to the IMGT/HLA 
      Database as well as empirical data from the histocompatibility and immunogenetics 
      community. This version 2.0.0 of the CWD catalogue is available online at 
      cwd.immunogenomics.org, and will be integrated into the Allele Frequencies Net 
      Database, the IMGT/HLA Database and National Marrow Donor Program's 
      bioinformatics web pages.
CI  - (c) 2013 John Wiley & Sons A/S.
FAU - Mack, S J
AU  - Mack SJ
AD  - Center for Genetics, Children's Hospital Oakland Research Institute, Oakland, CA, 
      USA. sjmack@chori.org
FAU - Cano, P
AU  - Cano P
FAU - Hollenbach, J A
AU  - Hollenbach JA
FAU - He, J
AU  - He J
FAU - Hurley, C K
AU  - Hurley CK
FAU - Middleton, D
AU  - Middleton D
FAU - Moraes, M E
AU  - Moraes ME
FAU - Pereira, S E
AU  - Pereira SE
FAU - Kempenich, J H
AU  - Kempenich JH
FAU - Reed, E F
AU  - Reed EF
FAU - Setterholm, M
AU  - Setterholm M
FAU - Smith, A G
AU  - Smith AG
FAU - Tilanus, M G
AU  - Tilanus MG
FAU - Torres, M
AU  - Torres M
FAU - Varney, M D
AU  - Varney MD
FAU - Voorter, C E M
AU  - Voorter CE
FAU - Fischer, G F
AU  - Fischer GF
FAU - Fleischhauer, K
AU  - Fleischhauer K
FAU - Goodridge, D
AU  - Goodridge D
FAU - Klitz, W
AU  - Klitz W
FAU - Little, A-M
AU  - Little AM
FAU - Maiers, M
AU  - Maiers M
FAU - Marsh, S G E
AU  - Marsh SG
FAU - Muller, C R
AU  - Muller CR
FAU - Noreen, H
AU  - Noreen H
FAU - Rozemuller, E H
AU  - Rozemuller EH
FAU - Sanchez-Mazas, A
AU  - Sanchez-Mazas A
FAU - Senitzer, D
AU  - Senitzer D
FAU - Trachtenberg, E
AU  - Trachtenberg E
FAU - Fernandez-Vina, Marcelo
AU  - Fernandez-Vina M
LA  - eng
GR  - U01 AI067068/AI/NIAID NIH HHS/United States
GR  - U01AI067068/AI/NIAID NIH HHS/United States
PT  - Journal Article
PT  - Research Support, N.I.H., Extramural
PL  - England
TA  - Tissue Antigens
JT  - Tissue antigens
JID - 0331072
RN  - 0 (HLA Antigens)
SB  - IM
MH  - *Alleles
MH  - Databases, Genetic
MH  - Gene Frequency
MH  - Genetic Loci/immunology
MH  - Genetics, Population
MH  - HLA Antigens/*classification/genetics/*immunology
MH  - Histocompatibility/genetics/*immunology
MH  - Histocompatibility Testing
MH  - Humans
MH  - Terminology as Topic
PMC - PMC3634360
MID - NIHMS447773
COIS- Conflicts of Interest The authors have declared no conflicting interests.
EDAT- 2013/03/21 06:00
MHDA- 2013/09/05 06:00
PMCR- 2014/04/01
CRDT- 2013/03/21 06:00
PHST- 2013/01/08 00:00 [received]
PHST- 2013/02/14 00:00 [revised]
PHST- 2013/02/15 00:00 [accepted]
PHST- 2013/03/21 06:00 [entrez]
PHST- 2013/03/21 06:00 [pubmed]
PHST- 2013/09/05 06:00 [medline]
PHST- 2014/04/01 00:00 [pmc-release]
AID - 10.1111/tan.12093 [doi]
PST - ppublish
SO  - Tissue Antigens. 2013 Apr;81(4):194-203. doi: 10.1111/tan.12093.