PMID- 23521535 OWN - NLM STAT- MEDLINE DCOM- 20131021 LR - 20240514 IS - 1520-510X (Electronic) IS - 0020-1669 (Print) IS - 0020-1669 (Linking) VI - 52 IP - 8 DP - 2013 Apr 15 TI - Switching metal ion coordination and DNA Recognition in a Tandem CCHHC-type zinc finger peptide. PG - 4721-8 LID - 10.1021/ic4003516 [doi] AB - Neural Zinc Finger Factor-1 (NZF-1) and Myelin Transcription Factor 1 (MyT1) are two homologous nonclassical zinc finger (ZF) proteins that are involved in the development of the central nervous system (CNS). Both NZF-1 and MyT1 contain multiple ZF domains, each of which contains an absolutely conserved Cys2His2Cys motif. All three cysteines and the second histidine have been shown to coordinate Zn(II); however, the role of the first histidine remains unresolved. Using a functional form of NZF-1 that contains two ZF domains (NZF-1-F2F3), mutant proteins in which each histidine was sequentially mutated to a phenylalanine were prepared to determine the role(s) of the histidine residues in DNA recognition. When the first histidine is mutated, the protein binds Zn(II) in an analogous manner to the native protein. Surprisingly, this mutant does not bind to target DNA (beta-RAR), suggesting that the noncoordinating histidine is critical for sequence selective DNA recognition. The first histidine will coordinate Zn(II) when the second histidine is mutated; however, the overall fold of the protein is perturbed leading to abrogation of DNA binding. NZF-1-F2F3 selectively binds to a specific DNA target sequence (from beta-RAR) with high affinity (nM); while its homologue MyT1 (MyT1-F2F3), which is 92% identical to NZF-1-F2F3, binds to this same DNA sequence nonspecifically. A single, nonconserved amino acid residue in NZF-1-F2F3 is shown to be responsible for this high affinity DNA binding to beta-RAR. When this residue (arginine) is engineered into the MyT1-F2F3 sequence, the affinity for beta-RAR DNA increases. FAU - Besold, Angelique N AU - Besold AN AD - Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, United States. FAU - Oluyadi, Abdulafeez A AU - Oluyadi AA FAU - Michel, Sarah L J AU - Michel SL LA - eng GR - F31 NS074768/NS/NINDS NIH HHS/United States GR - F31NS074768/NS/NINDS NIH HHS/United States PT - Journal Article PT - Research Support, N.I.H., Extramural PT - Research Support, U.S. Gov't, Non-P.H.S. DEP - 20130322 PL - United States TA - Inorg Chem JT - Inorganic chemistry JID - 0366543 RN - 0 (DNA-Binding Proteins) RN - 0 (Metals) RN - 0 (Myt1 protein, rat) RN - 0 (Myt1l protein, rat) RN - 0 (Nerve Tissue Proteins) RN - 0 (Peptides) RN - 0 (Trans-Activators) RN - 0 (Transcription Factors) RN - 3G0H8C9362 (Cobalt) RN - 4QD397987E (Histidine) RN - 9007-49-2 (DNA) RN - J41CSQ7QDS (Zinc) SB - IM MH - Amino Acid Sequence MH - Animals MH - Binding Sites MH - Cobalt/metabolism MH - DNA/chemistry/*metabolism MH - DNA-Binding Proteins/chemistry/genetics/*metabolism MH - Histidine/chemistry/genetics/metabolism MH - Metals/*metabolism MH - Models, Molecular MH - Molecular Sequence Data MH - Mutation MH - Nerve Tissue Proteins/chemistry/genetics/*metabolism MH - Peptides/*chemistry/genetics MH - Protein Binding MH - Rats MH - Sequence Alignment MH - Trans-Activators/chemistry/genetics/*metabolism MH - Transcription Factors/chemistry/genetics/*metabolism MH - Zinc/metabolism MH - *Zinc Fingers PMC - PMC3671583 MID - NIHMS476460 EDAT- 2013/03/26 06:00 MHDA- 2013/10/22 06:00 PMCR- 2013/06/04 CRDT- 2013/03/26 06:00 PHST- 2013/03/26 06:00 [entrez] PHST- 2013/03/26 06:00 [pubmed] PHST- 2013/10/22 06:00 [medline] PHST- 2013/06/04 00:00 [pmc-release] AID - 10.1021/ic4003516 [doi] PST - ppublish SO - Inorg Chem. 2013 Apr 15;52(8):4721-8. doi: 10.1021/ic4003516. Epub 2013 Mar 22.