PMID- 24068035
OWN - NLM
STAT- MEDLINE
DCOM- 20140515
LR  - 20211021
IS  - 1367-4811 (Electronic)
IS  - 1367-4803 (Print)
IS  - 1367-4803 (Linking)
VI  - 29
IP  - 24
DP  - 2013 Dec 15
TI  - BlastGraph: a comparative genomics tool based on BLAST and graph algorithms.
PG  - 3222-4
LID - 10.1093/bioinformatics/btt553 [doi]
AB  - BlastGraph is an interactive Java program for comparative genome analysis based 
      on Basic Local Alignment Search Tool (BLAST), graph clustering and data 
      visualization. The software generates clusters of sequences of multiple genomes 
      from all-to-all BLAST results and visualizes the results in graph plots together 
      with related information such as sequence features, gene conservation and 
      similarity relationships. Pruning algorithms are used to reduce results to more 
      meaningful subclusters. Subsequent analyses can then be conducted based on the 
      predicted clusters, including gene content, genome phylogenetics and gene gain 
      and loss. AVAILABILITY AND IMPLEMENTATION: https://github.com/bigwiv/BlastGraph.
FAU - Ye, Yanbo
AU  - Ye Y
AD  - Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of 
      Virology, Wuhan, Hubei, China, 430071, Graduate School of Chinese Academy of 
      Sciences, Beijing, China and Exiqon A/S, Vedbaek, Denmark.
FAU - Wei, Bo
AU  - Wei B
FAU - Wen, Lei
AU  - Wen L
FAU - Rayner, Simon
AU  - Rayner S
LA  - eng
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
DEP - 20130924
PL  - England
TA  - Bioinformatics
JT  - Bioinformatics (Oxford, England)
JID - 9808944
SB  - IM
MH  - *Algorithms
MH  - Cluster Analysis
MH  - Computational Biology/*methods
MH  - *Computer Graphics
MH  - Genomics/*methods
MH  - Phylogeny
MH  - Sequence Alignment
MH  - Software
PMC - PMC5994941
EDAT- 2013/09/27 06:00
MHDA- 2014/05/16 06:00
PMCR- 2014/12/15
CRDT- 2013/09/27 06:00
PHST- 2013/09/27 06:00 [entrez]
PHST- 2013/09/27 06:00 [pubmed]
PHST- 2014/05/16 06:00 [medline]
PHST- 2014/12/15 00:00 [pmc-release]
AID - btt553 [pii]
AID - 10.1093/bioinformatics/btt553 [doi]
PST - ppublish
SO  - Bioinformatics. 2013 Dec 15;29(24):3222-4. doi: 10.1093/bioinformatics/btt553. 
      Epub 2013 Sep 24.