PMID- 24200387 OWN - NLM STAT- MEDLINE DCOM- 20140930 LR - 20211203 IS - 1557-8534 (Electronic) IS - 1547-3287 (Print) IS - 1547-3287 (Linking) VI - 23 IP - 4 DP - 2014 Feb 15 TI - The miR-7 identified from collagen biomaterial-based three-dimensional cultured cells regulates neural stem cell differentiation. PG - 393-405 LID - 10.1089/scd.2013.0342 [doi] AB - Increasing evidence suggests that three-dimensional (3D) cultures provide more appropriate microenvironments to control stem cell response compared with traditional two-dimensional (2D) cultures. However, the molecular mechanism involved in 3D cultured stem cells is not well known. Several microRNAs whose target genes involved in the regulation of self-renewal and differentiation of stem cells were found to be downregulated in 3D cultured PA-1 cells. Among them, miR-7 was predicted to target Kruppel-like factor 4 (Klf4), a key gene for self-renewal of neural stem cells (NSCs). We showed that the differentiation of NSCs was inhibited in 3D collagen scaffolds compared with 2D cultured cells. The quantitative real-time PCR (qPCR) analysis indicated that the expression of miR-7 and Klf4 changed significantly in 2D cultures, whereas the expression stability of miR-7 and Klf4 was detected in 3D cultures. Using luciferase assay and western blot, Klf4 was identified as a target of miR-7 indicating that miR-7 plays a critical role in maintaining the self-renewal capacity through a Klf4-dependent mechanism in 3D cultured cells. Thus, the collagen scaffold-based 3D cell cultures may provide a platform to reveal the regulatory mechanism of cell regulators, which are difficult to find in traditional 2D cell cultures. FAU - Cui, Yi AU - Cui Y AD - 1 State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology , Chinese Academy of Sciences, Beijing, China . FAU - Xiao, Zhifeng AU - Xiao Z FAU - Chen, Tong AU - Chen T FAU - Wei, Jianshu AU - Wei J FAU - Chen, Lei AU - Chen L FAU - Liu, Lijun AU - Liu L FAU - Chen, Bing AU - Chen B FAU - Wang, Xiujie AU - Wang X FAU - Li, Xiaoran AU - Li X FAU - Dai, Jianwu AU - Dai J LA - eng PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20131221 PL - United States TA - Stem Cells Dev JT - Stem cells and development JID - 101197107 RN - 0 (3' Untranslated Regions) RN - 0 (KLF4 protein, human) RN - 0 (Kruppel-Like Factor 4) RN - 0 (Kruppel-Like Transcription Factors) RN - 0 (MIRN7 microRNA, human) RN - 0 (MicroRNAs) SB - IM MH - 3' Untranslated Regions MH - Base Sequence MH - Binding Sites MH - Cell Culture Techniques MH - *Cell Differentiation MH - Cell Line, Tumor MH - Cell Proliferation MH - Gene Expression MH - Humans MH - Kruppel-Like Factor 4 MH - Kruppel-Like Transcription Factors/*genetics/metabolism MH - MicroRNAs/*physiology MH - Neural Stem Cells/*physiology MH - RNA Interference MH - Transcriptome PMC - PMC3920754 EDAT- 2013/11/10 06:00 MHDA- 2014/10/01 06:00 PMCR- 2015/02/15 CRDT- 2013/11/09 06:00 PHST- 2013/11/09 06:00 [entrez] PHST- 2013/11/10 06:00 [pubmed] PHST- 2014/10/01 06:00 [medline] PHST- 2015/02/15 00:00 [pmc-release] AID - 10.1089/scd.2013.0342 [pii] AID - 10.1089/scd.2013.0342 [doi] PST - ppublish SO - Stem Cells Dev. 2014 Feb 15;23(4):393-405. doi: 10.1089/scd.2013.0342. Epub 2013 Dec 21.