PMID- 24489962 OWN - NLM STAT- MEDLINE DCOM- 20141006 LR - 20211021 IS - 1932-6203 (Electronic) IS - 1932-6203 (Linking) VI - 9 IP - 1 DP - 2014 TI - C26 cancer-induced muscle wasting is IKKbeta-dependent and NF-kappaB-independent. PG - e87776 LID - 10.1371/journal.pone.0087776 [doi] LID - e87776 AB - Existing data suggest that NF-kappaB signaling is a key regulator of cancer-induced skeletal muscle wasting. However, identification of the components of this signaling pathway and of the NF-kappaB transcription factors that regulate wasting is far from complete. In muscles of C26 tumor bearing mice, overexpression of dominant negative (d.n.) IKKbeta blocked muscle wasting by 69% and the IkappaBalpha-super repressor blocked wasting by 41%. In contrast, overexpression of d.n. IKKalpha or d.n. NIK did not block C26-induced wasting. Surprisingly, overexpression of d.n. p65 or d.n. c-Rel did not significantly affect muscle wasting. Genome-wide mRNA expression arrays showed upregulation of many genes previously implicated in muscle atrophy. To test if these upregulated genes were direct targets of NF-kappaB transcription factors, we compared genome-wide p65 binding to DNA in control and cachectic muscle using ChIP-sequencing. Bioinformatic analysis of ChIP-sequencing data from control and C26 muscles showed very little p65 binding to genes in cachexia and little to suggest that upregulated p65 binding influences the gene expression associated with muscle based cachexia. The p65 ChIP-seq data are consistent with our finding of no significant change in protein binding to an NF-kappaB oligonucleotide in a gel shift assay, no activation of a NF-kappaB-dependent reporter, and no effect of d.n.p65 overexpression in muscles of tumor bearing mice. Taken together, these data support the idea that although inhibition of IkappaBalpha, and particularly IKKbeta, blocks cancer-induced wasting, the alternative NF-kappaB signaling pathway is not required. In addition, the downstream NF-kappaB transcription factors, p65 and c-Rel do not appear to regulate the transcriptional changes induced by the C26 tumor. These data are consistent with the growing body of literature showing that there are NF-kappaB-independent substrates of IKKbeta and IkappaBalpha that regulate physiological processes. FAU - Cornwell, Evangeline W AU - Cornwell EW AD - Department of Health Sciences, Boston University, Boston, Massachusetts, United States of America. FAU - Mirbod, Azadeh AU - Mirbod A AD - Department of Health Sciences, Boston University, Boston, Massachusetts, United States of America. FAU - Wu, Chia-Ling AU - Wu CL AD - Department of Health Sciences, Boston University, Boston, Massachusetts, United States of America. FAU - Kandarian, Susan C AU - Kandarian SC AD - Department of Health Sciences, Boston University, Boston, Massachusetts, United States of America. FAU - Jackman, Robert W AU - Jackman RW AD - Department of Health Sciences, Boston University, Boston, Massachusetts, United States of America. LA - eng GR - R01 AR060217/AR/NIAMS NIH HHS/United States GR - AR060217/AR/NIAMS NIH HHS/United States PT - Journal Article PT - Research Support, N.I.H., Extramural DEP - 20140129 PL - United States TA - PLoS One JT - PloS one JID - 101285081 RN - 0 (Rela protein, mouse) RN - 0 (Transcription Factor RelA) RN - EC 2.7.11.10 (I-kappa B Kinase) SB - IM MH - Adenocarcinoma/*metabolism MH - Animals MH - Cachexia/*metabolism MH - Gene Expression Regulation, Neoplastic MH - Gene Ontology MH - I-kappa B Kinase/*metabolism MH - Male MH - Mice MH - Muscle, Skeletal/metabolism/pathology MH - Muscular Atrophy/*metabolism MH - Neoplasm Transplantation MH - Oligonucleotide Array Sequence Analysis MH - Transcription Factor RelA/*metabolism MH - Transcriptome PMC - PMC3906224 COIS- Competing Interests: The authors have declared that no competing interests exist. EDAT- 2014/02/04 06:00 MHDA- 2014/10/07 06:00 PMCR- 2014/01/29 CRDT- 2014/02/04 06:00 PHST- 2013/07/09 00:00 [received] PHST- 2013/12/30 00:00 [accepted] PHST- 2014/02/04 06:00 [entrez] PHST- 2014/02/04 06:00 [pubmed] PHST- 2014/10/07 06:00 [medline] PHST- 2014/01/29 00:00 [pmc-release] AID - PONE-D-13-28335 [pii] AID - 10.1371/journal.pone.0087776 [doi] PST - epublish SO - PLoS One. 2014 Jan 29;9(1):e87776. doi: 10.1371/journal.pone.0087776. eCollection 2014.