PMID- 24603864 OWN - NLM STAT- MEDLINE DCOM- 20150207 LR - 20211021 IS - 1932-6203 (Electronic) IS - 1932-6203 (Linking) VI - 9 IP - 3 DP - 2014 TI - Combinatorial assembly of small molecules into bivalent antagonists of TrkC or TrkA receptors. PG - e89617 LID - 10.1371/journal.pone.0089617 [doi] LID - e89617 AB - A library of peptidomimetics was assembled combinatorially into dimers on a triazine-based core. The pharmacophore corresponds to beta-turns of the neurotrophin polypeptides neurotrophin-3 (NT-3), nerve growth factor (NGF), or brain-derived neurotrophic factor (BDNF). These are the natural ligands for TrkC, TrkA, and TrkB receptors, respectively. The linker length and the side-chain orientation of each monomer within the bivalent mimics were systematically altered, and the impact of these changes on the function of each ligand was evaluated. While the monovalent peptidomimetics had no detectable binding or bioactivity, four bivalent peptidomimetics (2c, 2d, 2e, 3f) are selective TrkC ligands with antagonistic activity, and two bivalent peptidomimetics (1a, 1b) are TrkC and TrkA ligands with antagonistic activity. All these bivalent compounds block ligand-dependent receptor activation and cell survival, without affecting neuritogenic differentiation. This work adds to our understanding of how the neurotrophins function through Trk receptors, and demonstrates that peptidomimetics can be designed to selectively disturb specific biological signals, and may be used as pharmacological probes or as therapeutic leads. The concept of altering side-chain, linker length, and sequence orientation of a subunit within a pharmacophore provides an easy modular approach to generate larger libraries with diversified bioactivity. FAU - Brahimi, Fouad AU - Brahimi F AD - Lady Davis Institute-Jewish General Hospital, Montreal, Quebec, Canada. FAU - Ko, Eunhwa AU - Ko E AD - Department of Chemistry, Texas A&M University. Texas, United States of America. FAU - Malakhov, Andrey AU - Malakhov A AD - Department of Chemistry, Texas A&M University. Texas, United States of America. FAU - Burgess, Kevin AU - Burgess K AD - Department of Chemistry, Texas A&M University. Texas, United States of America. FAU - Saragovi, H Uri AU - Saragovi HU AD - Lady Davis Institute-Jewish General Hospital, Montreal, Quebec, Canada; Department of Pharmacology and Therapeutics, McGill University, Montreal, Quebec, Canada; Department of Oncology and the Cancer Center, McGill University, Montreal, Quebec, Canada. LA - eng GR - T32 DE014318/DE/NIDCR NIH HHS/United States GR - P41 GM076261/GM/NIGMS NIH HHS/United States GR - R01 MH070040/MH/NIMH NIH HHS/United States GR - UL1 TR001120/TR/NCATS NIH HHS/United States GR - GM076261/GM/NIGMS NIH HHS/United States GR - MH070040/MH/NIMH NIH HHS/United States PT - Journal Article PT - Research Support, N.I.H., Extramural PT - Research Support, Non-U.S. Gov't DEP - 20140306 PL - United States TA - PLoS One JT - PloS one JID - 101285081 RN - 0 (Brain-Derived Neurotrophic Factor) RN - 0 (Neurotrophin 3) RN - 0 (Peptidomimetics) RN - 0 (Small Molecule Libraries) RN - 9061-61-4 (Nerve Growth Factor) RN - EC 2.7.10.1 (Receptor, trkA) RN - EC 2.7.10.1 (Receptor, trkC) SB - IM MH - Animals MH - Blotting, Western MH - Brain-Derived Neurotrophic Factor/chemistry/pharmacology MH - Cell Line, Tumor MH - Cell Survival/drug effects MH - Cells, Cultured MH - Combinatorial Chemistry Techniques/*methods MH - Humans MH - Mice MH - Mice, Inbred C57BL MH - Models, Chemical MH - Molecular Structure MH - NIH 3T3 Cells MH - Nerve Growth Factor/chemistry/pharmacology MH - Neurotrophin 3/chemistry/pharmacology MH - PC12 Cells MH - Peptidomimetics/chemical synthesis/chemistry/*pharmacology MH - Rats MH - Receptor, trkA/*antagonists & inhibitors/genetics/metabolism MH - Receptor, trkC/*antagonists & inhibitors/genetics/metabolism MH - Small Molecule Libraries/chemical synthesis/chemistry/*pharmacology PMC - PMC3945644 COIS- Competing Interests: The authors have declared that no competing interests exist. EDAT- 2014/03/08 06:00 MHDA- 2015/02/11 06:00 PMCR- 2014/03/06 CRDT- 2014/03/08 06:00 PHST- 2013/10/15 00:00 [received] PHST- 2014/01/21 00:00 [accepted] PHST- 2014/03/08 06:00 [entrez] PHST- 2014/03/08 06:00 [pubmed] PHST- 2015/02/11 06:00 [medline] PHST- 2014/03/06 00:00 [pmc-release] AID - PONE-D-13-42202 [pii] AID - 10.1371/journal.pone.0089617 [doi] PST - epublish SO - PLoS One. 2014 Mar 6;9(3):e89617. doi: 10.1371/journal.pone.0089617. eCollection 2014.