PMID- 24618668
OWN - NLM
STAT- MEDLINE
DCOM- 20150529
LR  - 20211021
IS  - 1932-6203 (Electronic)
IS  - 1932-6203 (Linking)
VI  - 9
IP  - 3
DP  - 2014
TI  - Characterization of intestinal bacteria in wild and domesticated adult black 
      tiger shrimp (Penaeus monodon).
PG  - e91853
LID - 10.1371/journal.pone.0091853 [doi]
LID - e91853
AB  - The black tiger shrimp (Penaeus monodon) is a marine crustacean of economic 
      importance in the world market. To ensure sustainability of the shrimp industry, 
      production capacity and disease outbreak prevention must be improved. 
      Understanding healthy microbial balance inside the shrimp intestine can provide 
      an initial step toward better farming practice and probiotic applications. In 
      this study, we employed a barcode pyrosequencing analysis of V3-4 regions of 16S 
      rRNA genes to examine intestinal bacteria communities in wild-caught and 
      domesticated P. monodon broodstock. Shrimp faeces were removed from intestines 
      prior to further analysis in attempt to identify mucosal bacterial population. 
      Five phyla, Actinobacteria, Fusobacteria, Proteobacteria, Firmicutes and 
      Bacteroidetes, were found in all shrimp from both wild and domesticated 
      environments. The operational taxonomic unit (OTU) was assigned at 97% sequence 
      identity, and our pyrosequencing results identified 18 OTUs commonly found in 
      both groups. Sequences of the shared OTUs were similar to bacteria in three 
      phyla, namely i) Proteobacteria (Vibrio, Photobacterium, Novosphingobium, 
      Pseudomonas, Sphingomonas and Undibacterium), ii) Firmicutes (Fusibacter), and 
      iii) Bacteroidetes (Cloacibacterium). The shared bacterial members in P. monodon 
      from two different habitats provide evidence that the internal environments 
      within the host shrimp also exerts selective pressure on bacterial members. 
      Intestinal bacterial profiles were compared using denaturing gradient gel 
      electrophoresis (DGGE). The sequences from DGGE bands were similar to those of 
      Vibrio and Photobacterium in all shrimp, consistent with pyrosequencing results. 
      This work provides the first comprehensive report on bacterial populations in the 
      intestine of adult black tiger shrimp and reveals some similar bacterial members 
      between the intestine of wild-caught and domesticated shrimp.
FAU - Rungrassamee, Wanilada
AU  - Rungrassamee W
AD  - Microarray Laboratory, National Center for Genetic Engineering and Biotechnology 
      (BIOTEC), Khlong Luang, Pathum Thani, Thailand.
FAU - Klanchui, Amornpan
AU  - Klanchui A
AD  - Microarray Laboratory, National Center for Genetic Engineering and Biotechnology 
      (BIOTEC), Khlong Luang, Pathum Thani, Thailand.
FAU - Maibunkaew, Sawarot
AU  - Maibunkaew S
AD  - Microarray Laboratory, National Center for Genetic Engineering and Biotechnology 
      (BIOTEC), Khlong Luang, Pathum Thani, Thailand.
FAU - Chaiyapechara, Sage
AU  - Chaiyapechara S
AD  - Aquatic Molecular Genetics and Biotechnology Laboratory, National Center for 
      Genetic Engineering and Biotechnology (BIOTEC), Khlong Luang, Pathum Thani, 
      Thailand.
FAU - Jiravanichpaisal, Pikul
AU  - Jiravanichpaisal P
AD  - Aquatic Molecular Genetics and Biotechnology Laboratory, National Center for 
      Genetic Engineering and Biotechnology (BIOTEC), Khlong Luang, Pathum Thani, 
      Thailand.
FAU - Karoonuthaisiri, Nitsara
AU  - Karoonuthaisiri N
AD  - Microarray Laboratory, National Center for Genetic Engineering and Biotechnology 
      (BIOTEC), Khlong Luang, Pathum Thani, Thailand.
LA  - eng
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SI  - GENBANK/KF330425
SI  - GENBANK/KF330426
SI  - GENBANK/KF330427
SI  - GENBANK/KF330428
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
DEP - 20140311
PL  - United States
TA  - PLoS One
JT  - PloS one
JID - 101285081
RN  - 0 (RNA, Ribosomal, 16S)
SB  - IM
MH  - Animals
MH  - Bacteria/classification/*genetics
MH  - Biodiversity
MH  - Intestines/*microbiology
MH  - *Microbiota
MH  - Molecular Sequence Data
MH  - Penaeidae/*microbiology
MH  - Phylogeny
MH  - RNA, Ribosomal, 16S
MH  - Sequence Analysis, DNA
PMC - PMC3950284
COIS- Competing Interests: The authors have declared that no competing interests exist.
EDAT- 2014/03/13 06:00
MHDA- 2015/05/30 06:00
PMCR- 2014/03/11
CRDT- 2014/03/13 06:00
PHST- 2013/07/18 00:00 [received]
PHST- 2014/02/17 00:00 [accepted]
PHST- 2014/03/13 06:00 [entrez]
PHST- 2014/03/13 06:00 [pubmed]
PHST- 2015/05/30 06:00 [medline]
PHST- 2014/03/11 00:00 [pmc-release]
AID - PONE-D-13-29505 [pii]
AID - 10.1371/journal.pone.0091853 [doi]
PST - epublish
SO  - PLoS One. 2014 Mar 11;9(3):e91853. doi: 10.1371/journal.pone.0091853. eCollection 
      2014.