PMID- 25052701
OWN - NLM
STAT- MEDLINE
DCOM- 20150220
LR  - 20211021
IS  - 1758-0463 (Electronic)
IS  - 1758-0463 (Linking)
VI  - 2014
DP  - 2014
TI  - Assisting manual literature curation for protein-protein interactions using 
      BioQRator.
LID - bau067 [pii]
LID - 10.1093/database/bau067 [doi]
AB  - The time-consuming nature of manual curation and the rapid growth of biomedical 
      literature severely limit the number of articles that database curators can 
      scrutinize and annotate. Hence, semi-automatic tools can be a valid support to 
      increase annotation throughput. Although a handful of curation assistant tools 
      are already available, to date, little has been done to formally evaluate their 
      benefit to biocuration. Moreover, most curation tools are designed for specific 
      problems. Thus, it is not easy to apply an annotation tool for multiple tasks. 
      BioQRator is a publicly available web-based tool for annotating biomedical 
      literature. It was designed to support general tasks, i.e. any task annotating 
      entities and relationships. In the BioCreative IV edition, BioQRator was tailored 
      for protein- protein interaction (PPI) annotation by migrating information from 
      PIE the search. The results obtained from six curators showed that the precision 
      on the top 10 documents doubled with PIE the search compared with PubMed search 
      results. It was also observed that the annotation time for a full PPI annotation 
      task decreased for a beginner-intermediate level annotator. This finding is 
      encouraging because text-mining techniques were not directly involved in the full 
      annotation task and BioQRator can be easily integrated with any text-mining 
      resources. Database URL: http://www.bioqrator.org/.
CI  - (c) The Author(s) 2014. Published by Oxford University Press.
FAU - Kwon, Dongseop
AU  - Kwon D
AD  - Department of Computer Engineering, Myongji University, Yongin 449-728, South 
      Korea, National Center for Biotechnology Information, National Library of 
      Medicine, National Institutes of Health, Bethesda, MD 20894, USA, Department of 
      Biomedical Informatics, Asan Medical Center, Seoul 138-736, South Korea and 
      Institute for Research in Immunology and Cancer, Universite de Montreal, Montreal 
      QC H3C 3J7, Canada dongseop@mju.ac.kr.
FAU - Kim, Sun
AU  - Kim S
AD  - Department of Computer Engineering, Myongji University, Yongin 449-728, South 
      Korea, National Center for Biotechnology Information, National Library of 
      Medicine, National Institutes of Health, Bethesda, MD 20894, USA, Department of 
      Biomedical Informatics, Asan Medical Center, Seoul 138-736, South Korea and 
      Institute for Research in Immunology and Cancer, Universite de Montreal, Montreal 
      QC H3C 3J7, Canada sun.kim@nih.gov.
FAU - Shin, Soo-Yong
AU  - Shin SY
AD  - Department of Computer Engineering, Myongji University, Yongin 449-728, South 
      Korea, National Center for Biotechnology Information, National Library of 
      Medicine, National Institutes of Health, Bethesda, MD 20894, USA, Department of 
      Biomedical Informatics, Asan Medical Center, Seoul 138-736, South Korea and 
      Institute for Research in Immunology and Cancer, Universite de Montreal, Montreal 
      QC H3C 3J7, Canada.
FAU - Chatr-aryamontri, Andrew
AU  - Chatr-aryamontri A
AD  - Department of Computer Engineering, Myongji University, Yongin 449-728, South 
      Korea, National Center for Biotechnology Information, National Library of 
      Medicine, National Institutes of Health, Bethesda, MD 20894, USA, Department of 
      Biomedical Informatics, Asan Medical Center, Seoul 138-736, South Korea and 
      Institute for Research in Immunology and Cancer, Universite de Montreal, Montreal 
      QC H3C 3J7, Canada.
FAU - Wilbur, W John
AU  - Wilbur WJ
AD  - Department of Computer Engineering, Myongji University, Yongin 449-728, South 
      Korea, National Center for Biotechnology Information, National Library of 
      Medicine, National Institutes of Health, Bethesda, MD 20894, USA, Department of 
      Biomedical Informatics, Asan Medical Center, Seoul 138-736, South Korea and 
      Institute for Research in Immunology and Cancer, Universite de Montreal, Montreal 
      QC H3C 3J7, Canada.
LA  - eng
GR  - Intramural NIH HHS/United States
PT  - Journal Article
PT  - Research Support, N.I.H., Intramural
PT  - Research Support, Non-U.S. Gov't
DEP - 20140722
PL  - England
TA  - Database (Oxford)
JT  - Database : the journal of biological databases and curation
JID - 101517697
SB  - IM
MH  - Data Curation/*methods
MH  - Data Mining/*methods
MH  - Humans
MH  - *Internet
MH  - Protein Interaction Mapping/*methods
MH  - *Software
PMC - PMC4105708
EDAT- 2014/07/24 06:00
MHDA- 2015/02/24 06:00
PMCR- 2014/07/21
CRDT- 2014/07/24 06:00
PHST- 2014/07/24 06:00 [entrez]
PHST- 2014/07/24 06:00 [pubmed]
PHST- 2015/02/24 06:00 [medline]
PHST- 2014/07/21 00:00 [pmc-release]
AID - bau067 [pii]
AID - 10.1093/database/bau067 [doi]
PST - epublish
SO  - Database (Oxford). 2014 Jul 22;2014:bau067. doi: 10.1093/database/bau067. Print 
      2014.