PMID- 25098597 OWN - NLM STAT- MEDLINE DCOM- 20151130 LR - 20211021 IS - 1932-6203 (Electronic) IS - 1932-6203 (Linking) VI - 9 IP - 8 DP - 2014 TI - Gas chromatography time-of-flight mass spectrometry (GC-TOF-MS)-based metabolomics for comparison of caffeinated and decaffeinated coffee and its implications for Alzheimer's disease. PG - e104621 LID - 10.1371/journal.pone.0104621 [doi] LID - e104621 AB - Findings from epidemiology, preclinical and clinical studies indicate that consumption of coffee could have beneficial effects against dementia and Alzheimer's disease (AD). The benefits appear to come from caffeinated coffee, but not decaffeinated coffee or pure caffeine itself. Therefore, the objective of this study was to use metabolomics approach to delineate the discriminant metabolites between caffeinated and decaffeinated coffee, which could have contributed to the observed therapeutic benefits. Gas chromatography time-of-flight mass spectrometry (GC-TOF-MS)-based metabolomics approach was employed to characterize the metabolic differences between caffeinated and decaffeinated coffee. Orthogonal partial least squares discriminant analysis (OPLS-DA) showed distinct separation between the two types of coffee (cumulative Q(2) = 0.998). A total of 69 discriminant metabolites were identified based on the OPLS-DA model, with 37 and 32 metabolites detected to be higher in caffeinated and decaffeinated coffee, respectively. These metabolites include several benzoate and cinnamate-derived phenolic compounds, organic acids, sugar, fatty acids, and amino acids. Our study successfully established GC-TOF-MS based metabolomics approach as a highly robust tool in discriminant analysis between caffeinated and decaffeinated coffee samples. Discriminant metabolites identified in this study are biologically relevant and provide valuable insights into therapeutic research of coffee against AD. Our data also hint at possible involvement of gut microbial metabolism to enhance therapeutic potential of coffee components, which represents an interesting area for future research. FAU - Chang, Kai Lun AU - Chang KL AD - Department of Pharmacy, Faculty of Science, National University of Singapore, Singapore, Singapore. FAU - Ho, Paul C AU - Ho PC AD - Department of Pharmacy, Faculty of Science, National University of Singapore, Singapore, Singapore. LA - eng PT - Comparative Study PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20140806 PL - United States TA - PLoS One JT - PloS one JID - 101285081 RN - 0 (Coffee) SB - IM MH - *Alzheimer Disease MH - Coffee/*chemistry MH - *Food Analysis MH - *Gas Chromatography-Mass Spectrometry MH - Humans MH - *Metabolomics PMC - PMC4123969 COIS- Competing Interests: The authors have declared that no competing interests exist. EDAT- 2014/08/08 06:00 MHDA- 2015/12/15 06:00 PMCR- 2014/08/06 CRDT- 2014/08/08 06:00 PHST- 2014/04/11 00:00 [received] PHST- 2014/07/14 00:00 [accepted] PHST- 2014/08/08 06:00 [entrez] PHST- 2014/08/08 06:00 [pubmed] PHST- 2015/12/15 06:00 [medline] PHST- 2014/08/06 00:00 [pmc-release] AID - PONE-D-14-16282 [pii] AID - 10.1371/journal.pone.0104621 [doi] PST - epublish SO - PLoS One. 2014 Aug 6;9(8):e104621. doi: 10.1371/journal.pone.0104621. eCollection 2014.