PMID- 25390683 OWN - NLM STAT- MEDLINE DCOM- 20151019 LR - 20181113 IS - 1999-4915 (Electronic) IS - 1999-4915 (Linking) VI - 6 IP - 11 DP - 2014 Nov 10 TI - A unique evolution of the s2 gene of equine infectious anemia virus in hosts correlated with particular infection statuses. PG - 4265-79 LID - 10.3390/v6114265 [doi] AB - Equine infectious anemia virus (EIAV) is a member of the Lentivirus genus in the Retroviridae family that exhibits a genomic structure similar to that of HIV-1. The S2 accessory proteins play important roles in viral replication in vivo and in viral pathogenicity; however, studies on S2 evolution in vivo are limited. This study analyzed the evolutionary characteristics of the S2 gene of a pathogenic EIAV strain, EIAVLN40, in four experimentally infected horses. The results demonstrated that 14.7% (10 of 68 residues) of the stable amino acid mutations occurred longitudinally in S2 during a 150-day infection period. Further analysis revealed that six of the ten mutated residues were positively selected during the infection. Alignment and phylogenetic analyses showed that the S2 gene sequences of viruses isolated from the infected horses at the early stage of EIAVLN40 infection were highly homologous and similar to the vaccine-specific sequence. The S2 gene variants isolated from the febrile episodes and late phase of infection became homologous to the S2 gene sequence of the inoculating EIAVLN40 strain. Our results indicate that the S2 gene evolves in diversity and divergence in vivo in different stages of EIAV infection and that this evolution correlates with the pathogenicity of the virus. FAU - Wang, Xue-Feng AU - Wang XF AD - State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute of Chinese Academy of Agricultural Sciences, Harbin 150001, China. xuefengwang1982@126.com. FAU - Wang, Shuai AU - Wang S AD - State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute of Chinese Academy of Agricultural Sciences, Harbin 150001, China. 8111781252@163.com. FAU - Liu, Qiang AU - Liu Q AD - State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute of Chinese Academy of Agricultural Sciences, Harbin 150001, China. liuqiangtriumph@163.com. FAU - Lin, Yue-Zhi AU - Lin YZ AD - State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute of Chinese Academy of Agricultural Sciences, Harbin 150001, China. sndhr@163.com. FAU - Du, Cheng AU - Du C AD - State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute of Chinese Academy of Agricultural Sciences, Harbin 150001, China. chengdu1981@163.com. FAU - Tang, Yan-Dong AU - Tang YD AD - State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute of Chinese Academy of Agricultural Sciences, Harbin 150001, China. tangyandong2008@163.com. FAU - Na, Lei AU - Na L AD - State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute of Chinese Academy of Agricultural Sciences, Harbin 150001, China. nl2zy@163.com. FAU - Wang, Xiaojun AU - Wang X AD - State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute of Chinese Academy of Agricultural Sciences, Harbin 150001, China. xjw@hvri.ac.cn. FAU - Zhou, Jian-Hua AU - Zhou JH AD - State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute of Chinese Academy of Agricultural Sciences, Harbin 150001, China. jianhua_uc@126.com. 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GENBANK/HQ223334 SI - GENBANK/HQ223335 PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20141110 PL - Switzerland TA - Viruses JT - Viruses JID - 101509722 RN - 0 (RNA, Viral) RN - 0 (S2 protein, Equine infectious anemia virus) RN - 0 (Viral Proteins) SB - IM MH - Animals MH - Equine Infectious Anemia/*virology MH - *Evolution, Molecular MH - *Genetic Variation MH - Genotype MH - Horses MH - Infectious Anemia Virus, Equine/*genetics/isolation & purification MH - Male MH - Molecular Sequence Data MH - Mutation MH - Phylogeny MH - RNA, Viral/genetics MH - Selection, Genetic MH - Sequence Analysis, DNA MH - Sequence Homology, Amino Acid MH - Time Factors MH - Viral Proteins/*genetics PMC - PMC4246221 EDAT- 2014/11/13 06:00 MHDA- 2015/10/20 06:00 PMCR- 2014/11/01 CRDT- 2014/11/13 06:00 PHST- 2014/09/05 00:00 [received] PHST- 2014/10/26 00:00 [revised] PHST- 2014/10/29 00:00 [accepted] PHST- 2014/11/13 06:00 [entrez] PHST- 2014/11/13 06:00 [pubmed] PHST- 2015/10/20 06:00 [medline] PHST- 2014/11/01 00:00 [pmc-release] AID - v6114265 [pii] AID - viruses-06-04265 [pii] AID - 10.3390/v6114265 [doi] PST - epublish SO - Viruses. 2014 Nov 10;6(11):4265-79. doi: 10.3390/v6114265.