PMID- 26047146
OWN - NLM
STAT- MEDLINE
DCOM- 20160509
LR  - 20181202
IS  - 1660-4601 (Electronic)
IS  - 1661-7827 (Print)
IS  - 1660-4601 (Linking)
VI  - 12
IP  - 6
DP  - 2015 Jun 3
TI  - SaDA: From Sampling to Data Analysis-An Extensible Open Source Infrastructure for 
      Rapid, Robust and Automated Management and Analysis of Modern Ecological 
      High-Throughput Microarray Data.
PG  - 6352-66
LID - 10.3390/ijerph120606352 [doi]
AB  - One of the most crucial characteristics of day-to-day laboratory information 
      management is the collection, storage and retrieval of information about research 
      subjects and environmental or biomedical samples. An efficient link between 
      sample data and experimental results is absolutely important for the successful 
      outcome of a collaborative project. Currently available software solutions are 
      largely limited to large scale, expensive commercial Laboratory Information 
      Management Systems (LIMS). Acquiring such LIMS indeed can bring laboratory 
      information management to a higher level, but most of the times this requires a 
      sufficient investment of money, time and technical efforts. There is a clear need 
      for a light weighted open source system which can easily be managed on local 
      servers and handled by individual researchers. Here we present a software named 
      SaDA for storing, retrieving and analyzing data originated from microorganism 
      monitoring experiments. SaDA is fully integrated in the management of 
      environmental samples, oligonucleotide sequences, microarray data and the 
      subsequent downstream analysis procedures. It is simple and generic software, and 
      can be extended and customized for various environmental and biomedical studies.
FAU - Singh, Kumar Saurabh
AU  - Singh KS
AD  - School of Biosciences and Veterinary Medicine, University of Camerino, Via 
      Gentile III da Varano Camerino 62032, Italy. kumar.saurabhsingh@unicam.it.
FAU - Thual, Dominique
AU  - Thual D
AD  - Next Generation Bioinformatics s.r.l Camerino 62032, Italy. dom_thual@yahoo.fr.
FAU - Spurio, Roberto
AU  - Spurio R
AD  - School of Biosciences and Veterinary Medicine, University of Camerino, Via 
      Gentile III da Varano Camerino 62032, Italy. roberto.spurio@unicam.it.
FAU - Cannata, Nicola
AU  - Cannata N
AD  - School of Science and Technology, University of Camerino, Via Madonna delle 
      Carceri Camerino 62032, Italy. nicola.cannata@gmail.com.
LA  - eng
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
DEP - 20150603
PL  - Switzerland
TA  - Int J Environ Res Public Health
JT  - International journal of environmental research and public health
JID - 101238455
SB  - IM
MH  - Ecology/methods
MH  - *Environmental Microbiology
MH  - Environmental Monitoring/methods
MH  - Information Management/*methods
MH  - *Microarray Analysis
MH  - *Software
PMC - PMC4483705
OTO - NOTNLM
OT  - LIMS
OT  - data management
OT  - ecological assessment
OT  - environmental studies
OT  - microarrays
OT  - open source system
OT  - software
EDAT- 2015/06/06 06:00
MHDA- 2016/05/10 06:00
PMCR- 2015/06/01
CRDT- 2015/06/06 06:00
PHST- 2015/02/15 00:00 [received]
PHST- 2015/05/21 00:00 [revised]
PHST- 2015/05/29 00:00 [accepted]
PHST- 2015/06/06 06:00 [entrez]
PHST- 2015/06/06 06:00 [pubmed]
PHST- 2016/05/10 06:00 [medline]
PHST- 2015/06/01 00:00 [pmc-release]
AID - ijerph120606352 [pii]
AID - ijerph-12-06352 [pii]
AID - 10.3390/ijerph120606352 [doi]
PST - epublish
SO  - Int J Environ Res Public Health. 2015 Jun 3;12(6):6352-66. doi: 
      10.3390/ijerph120606352.