PMID- 26334924
OWN - NLM
STAT- MEDLINE
DCOM- 20160914
LR  - 20200108
IS  - 1934-340X (Electronic)
IS  - 1934-3396 (Linking)
VI  - 51
DP  - 2015 Sep 3
TI  - Using RAxML to Infer Phylogenies.
PG  - 6.14.1-6.14.14
LID - 10.1002/0471250953.bi0614s51 [doi]
AB  - Inference of phylogenetic trees under the maximum likelihood (ML) criterion 
      represents a routine task in biological data analysis. In this unit we describe 
      how to plan analyses and use Randomized Accelerated Maximum Likelihood (RAxML) 
      for phylogenetic inferences under ML, how to infer support values using the 
      standard bootstrap procedure as well as other statistical measures, and how to 
      conduct post-analyses on collections/sets of phylogenetic trees including 
      statistical significance tests and consensus tree methods. We also discuss what 
      measures can be taken and what further analyses can be conducted when 
      relationships in the inferred tree exhibit "low" support.
CI  - Copyright (c) 2015 John Wiley & Sons, Inc.
FAU - Stamatakis, Alexandros
AU  - Stamatakis A
AD  - Scientific Computing Group, Heidelberg Institute for Theoretical Studies, 
      Heidelberg, Germany.
AD  - Institute of Theoretical Informatics, Karlsruhe Institute of Technology, 
      Karlsruhe, Germany.
LA  - eng
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
DEP - 20150903
PL  - United States
TA  - Curr Protoc Bioinformatics
JT  - Current protocols in bioinformatics
JID - 101157830
SB  - IM
MH  - Computer Simulation
MH  - *Data Interpretation, Statistical
MH  - *Genetics, Population
MH  - *Likelihood Functions
MH  - *Models, Genetic
MH  - *Models, Statistical
MH  - *Phylogeny
OTO - NOTNLM
OT  - bootstrap support
OT  - consensus tree methods
OT  - maximum likelihood
OT  - phylogenetics
EDAT- 2015/09/04 06:00
MHDA- 2016/09/15 06:00
CRDT- 2015/09/04 06:00
PHST- 2015/09/04 06:00 [entrez]
PHST- 2015/09/04 06:00 [pubmed]
PHST- 2016/09/15 06:00 [medline]
AID - 10.1002/0471250953.bi0614s51 [doi]
PST - epublish
SO  - Curr Protoc Bioinformatics. 2015 Sep 3;51:6.14.1-6.14.14. doi: 
      10.1002/0471250953.bi0614s51.