PMID- 26635733
OWN - NLM
STAT- PubMed-not-MEDLINE
DCOM- 20151204
LR  - 20220310
IS  - 1664-302X (Print)
IS  - 1664-302X (Electronic)
IS  - 1664-302X (Linking)
VI  - 6
DP  - 2015
TI  - Different bacterial communities in heat and gamma irradiation treated replant 
      disease soils revealed by 16S rRNA gene analysis - contribution to improved 
      aboveground apple plant growth?
PG  - 1224
LID - 10.3389/fmicb.2015.01224 [doi]
LID - 1224
AB  - Replant disease (RD) severely affects apple production in propagation tree 
      nurseries and in fruit orchards worldwide. This study aimed to investigate the 
      effects of soil disinfection treatments on plant growth and health in a biotest 
      in two different RD soil types under greenhouse conditions and to link the plant 
      growth status with the bacterial community composition at the time of plant 
      sampling. In the biotest performed we observed that the aboveground growth of 
      apple rootstock M26 plants after 8 weeks was improved in the two RD soils either 
      treated at 50 degrees C or with gamma irradiation compared to the untreated RD soils. 
      Total community DNA was extracted from soil loosely adhering to the roots and 
      quantitative real-time PCR revealed no pronounced differences in 16S rRNA gene 
      copy numbers. 16S rRNA gene-based bacterial community analysis by denaturing 
      gradient gel electrophoresis (DGGE) and 454-pyrosequencing revealed significant 
      differences in the bacterial community composition even after 8 weeks of plant 
      growth. In both soils, the treatments affected different phyla but only the 
      relative abundance of Acidobacteria was reduced by both treatments. The genera 
      Streptomyces, Bacillus, Paenibacillus, and Sphingomonas had a higher relative 
      abundance in both heat treated soils, whereas the relative abundance of 
      Mucilaginibacter, Devosia, and Rhodanobacter was increased in the 
      gamma-irradiated soils and only the genus Phenylobacterium was increased in both 
      treatments. The increased abundance of genera with potentially beneficial 
      bacteria, i.e., potential degraders of phenolic compounds might have contributed 
      to the improved plant growth in both treatments.
FAU - Yim, Bunlong
AU  - Yim B
AD  - Section of Woody Plant and Propagation Physiology, Institute of Horticultural 
      Production Systems, Leibniz Universitat Hannover Hannover, Germany.
FAU - Winkelmann, Traud
AU  - Winkelmann T
AD  - Section of Woody Plant and Propagation Physiology, Institute of Horticultural 
      Production Systems, Leibniz Universitat Hannover Hannover, Germany.
FAU - Ding, Guo-Chun
AU  - Ding GC
AD  - College of Resources and Environmental Sciences, China Agricultural University 
      Beijing, China ; Beijing Key Laboratory of Biodiversity and Organic farming, 
      China Agricultural University Beijing, China.
FAU - Smalla, Kornelia
AU  - Smalla K
AD  - Institute for Epidemiology and Pathogen Diagnostics, Julius Kuhn-Institut - 
      Federal Research Centre for Cultivated Plants Braunschweig, Germany.
LA  - eng
PT  - Journal Article
DEP - 20151106
PL  - Switzerland
TA  - Front Microbiol
JT  - Frontiers in microbiology
JID - 101548977
PMC - PMC4654428
OTO - NOTNLM
OT  - DGGE
OT  - apple replant disease
OT  - bacterial community composition
OT  - bacterial diversity
OT  - biotest
OT  - pyrosequencing
OT  - qPCR
EDAT- 2015/12/05 06:00
MHDA- 2015/12/05 06:01
PMCR- 2015/11/06
CRDT- 2015/12/05 06:00
PHST- 2015/07/26 00:00 [received]
PHST- 2015/10/19 00:00 [accepted]
PHST- 2015/12/05 06:00 [entrez]
PHST- 2015/12/05 06:00 [pubmed]
PHST- 2015/12/05 06:01 [medline]
PHST- 2015/11/06 00:00 [pmc-release]
AID - 10.3389/fmicb.2015.01224 [doi]
PST - epublish
SO  - Front Microbiol. 2015 Nov 6;6:1224. doi: 10.3389/fmicb.2015.01224. eCollection 
      2015.