PMID- 26748333
OWN - NLM
STAT- MEDLINE
DCOM- 20160706
LR  - 20190410
IS  - 1096-0341 (Electronic)
IS  - 0042-6822 (Print)
IS  - 0042-6822 (Linking)
VI  - 489
DP  - 2016 Feb
TI  - Identification of structural and morphogenesis genes of Pseudoalteromonas phage 
      phiRIO-1 and placement within the evolutionary history of Podoviridae.
PG  - 116-27
LID - S0042-6822(15)00526-7 [pii]
LID - 10.1016/j.virol.2015.12.005 [doi]
AB  - The virion proteins of Pseudoalteromonas phage phiRIO-1 were identified and 
      quantitated by mass spectrometry and gel densitometry. Bioinformatic methods 
      customized to deal with extreme divergence defined a phiRIO-1 tail structure 
      homology group of phages, which was further related to T7 tail and internal 
      virion proteins (IVPs). Similarly, homologs of tubular tail components and 
      internal virion proteins were identified in essentially all completely sequenced 
      podoviruses other than those in the subfamily Picovirinae. The podoviruses were 
      subdivided into several tail structure homology groups, in addition to the RIO-1 
      and T7 groups. Molecular phylogeny indicated that these groups all arose about 
      the same ancient time as the phiRIO-1/T7 split. Hence, the T7-like infection 
      mechanism involving the IVPs was an ancestral property of most podoviruses. The 
      IVPs were found to variably host both tail lysozyme domains and domains destined 
      for the cytoplasm, including the N4 virion RNA polymerase embedded within an 
      IVP-D homolog.
CI  - Copyright (c) 2015 The Authors. Published by Elsevier Inc. All rights reserved.
FAU - Hardies, Stephen C
AU  - Hardies SC
AD  - Department of Biochemistry, The University of Texas Health Science Center at San 
      Antonio, TX 78229-3900, USA. Electronic address: hardies@uthscsa.edu.
FAU - Thomas, Julie A
AU  - Thomas JA
AD  - Department of Biochemistry and Molecular Biology, University of Maryland 
      Baltimore, Baltimore, MD, USA.
FAU - Black, Lindsay
AU  - Black L
AD  - Department of Biochemistry and Molecular Biology, University of Maryland 
      Baltimore, Baltimore, MD, USA.
FAU - Weintraub, Susan T
AU  - Weintraub ST
AD  - Department of Biochemistry, The University of Texas Health Science Center at San 
      Antonio, TX 78229-3900, USA.
FAU - Hwang, Chung Y
AU  - Hwang CY
AD  - Division of Life Sciences, Korea Polar Research Institute, Incheon, South Korea.
FAU - Cho, Byung C
AU  - Cho BC
AD  - Microbial Oceanography Laboratory, School of Earth and Environmental Sciences and 
      Research Institute of Oceanography (RIO), Seoul National University, Seoul 08826, 
      South Korea. Electronic address: bccho@snu.ac.kr.
LA  - eng
GR  - R01 AI011676/AI/NIAID NIH HHS/United States
GR  - S10 RR025111/RR/NCRR NIH HHS/United States
GR  - R01AI11676/AI/NIAID NIH HHS/United States
GR  - 1S10RR025111-01/RR/NCRR NIH HHS/United States
PT  - Journal Article
PT  - Research Support, N.I.H., Extramural
PT  - Research Support, Non-U.S. Gov't
PT  - Research Support, U.S. Gov't, Non-P.H.S.
DEP - 20151231
PL  - United States
TA  - Virology
JT  - Virology
JID - 0110674
SB  - IM
MH  - Bacteriophages/classification/*genetics/growth & development/isolation & 
      purification
MH  - *Evolution, Molecular
MH  - Genome, Viral
MH  - Molecular Sequence Data
MH  - Phylogeny
MH  - Podoviridae/classification/*genetics/growth & development/isolation & 
      purification
MH  - Pseudoalteromonas/*virology
PMC - PMC4819975
MID - NIHMS763184
OTO - NOTNLM
OT  - Bacteriophage
OT  - Podoviruses
OT  - Virion structure
EDAT- 2016/01/10 06:00
MHDA- 2016/07/07 06:00
PMCR- 2016/04/04
CRDT- 2016/01/10 06:00
PHST- 2015/09/14 00:00 [received]
PHST- 2015/10/12 00:00 [revised]
PHST- 2015/12/13 00:00 [accepted]
PHST- 2016/01/10 06:00 [entrez]
PHST- 2016/01/10 06:00 [pubmed]
PHST- 2016/07/07 06:00 [medline]
PHST- 2016/04/04 00:00 [pmc-release]
AID - S0042-6822(15)00526-7 [pii]
AID - 10.1016/j.virol.2015.12.005 [doi]
PST - ppublish
SO  - Virology. 2016 Feb;489:116-27. doi: 10.1016/j.virol.2015.12.005. Epub 2015 Dec 
      31.