PMID- 26853871
OWN - NLM
STAT- MEDLINE
DCOM- 20160614
LR  - 20160208
IS  - 0289-0003 (Print)
IS  - 0289-0003 (Linking)
VI  - 33
IP  - 1
DP  - 2016 Feb
TI  - Whole Genome Re-Sequencing of Three Domesticated Chicken Breeds.
PG  - 73-7
LID - 10.2108/zs150071 [doi]
AB  - Chicken is one of the most popular domesticated species worldwide, as it can 
      serve an important role in agricultural as well as biomedical research fields. 
      Because it inhabits almost every continent and presents diverse morphology and 
      traits, the need of genetic markers for distinguishing each breed for various 
      purposes has increased. The whole genome sequencing of three different breeds 
      (White Leghorn, Korean domestic, and Araucana) that show similar coloring 
      patterns, with the exception of the White Leghorn breed, have confirmed 
      previously reported genomic alterations and identified many novel variants. 
      Additionally, the Whole Genome Re-Sequencing (WGRS) approach identified an 
      approximately 4 kb insert within SLCO1B3 responsible for blue egg shell color. 
      Targeted investigation of pigment-related genes corroborated previously reported 
      non-synonymous mutations, and provided deeper insight into chicken coloring, 
      where not a single but a combination of non-synonymous mutations in the MC1R gene 
      is likely to be responsible for altered feather coloring.
FAU - Oh, Dongyep
AU  - Oh D
AD  - 1 Livestock Research institute, Gyeongsangbuk-Do, Yeongju, Gyeongbuk, 750-871, 
      Republic of Korea.
FAU - Son, Bongjun
AU  - Son B
AD  - 2 Theragen BiO institute, TheragenEtex, Suwon, Gyueonggi-do, 443-270, Republic of 
      Korea.
FAU - Mun, Seyoung
AU  - Mun S
AD  - 3 Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for 
      Regenerative Medicine, Dan kook University, Cheonan, 330-714, Republic of Korea.
AD  - 4 DKU-Theragen institute for NGS analysis (DTiNa), Cheonan, 330-714, Republic of 
      Korea.
FAU - Oh, Man Hwan
AU  - Oh MH
AD  - 3 Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for 
      Regenerative Medicine, Dan kook University, Cheonan, 330-714, Republic of Korea.
FAU - Oh, Sejong
AU  - Oh S
AD  - 3 Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for 
      Regenerative Medicine, Dan kook University, Cheonan, 330-714, Republic of Korea.
FAU - Ha, Jaejung
AU  - Ha J
AD  - 1 Livestock Research institute, Gyeongsangbuk-Do, Yeongju, Gyeongbuk, 750-871, 
      Republic of Korea.
FAU - Yi, Junkoo
AU  - Yi J
AD  - 1 Livestock Research institute, Gyeongsangbuk-Do, Yeongju, Gyeongbuk, 750-871, 
      Republic of Korea.
FAU - Lee, Seunguk
AU  - Lee S
AD  - 5 Biotechnology Research Center, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, 
      Tokyo, Japan.
FAU - Han, Kyudong
AU  - Han K
AD  - 3 Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for 
      Regenerative Medicine, Dan kook University, Cheonan, 330-714, Republic of Korea.
AD  - 4 DKU-Theragen institute for NGS analysis (DTiNa), Cheonan, 330-714, Republic of 
      Korea.
LA  - eng
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
PL  - Japan
TA  - Zoolog Sci
JT  - Zoological science
JID - 8702287
RN  - 0 (Organic Anion Transporters, Sodium-Independent)
RN  - 0 (Pigments, Biological)
RN  - 0 (Receptor, Melanocortin, Type 1)
SB  - IM
MH  - Animals
MH  - Chickens/*genetics
MH  - Feathers/physiology
MH  - Gene Expression Regulation/physiology
MH  - *Genetic Variation
MH  - *Genome
MH  - Organic Anion Transporters, Sodium-Independent/genetics/metabolism
MH  - Phylogeny
MH  - Pigments, Biological
MH  - Receptor, Melanocortin, Type 1/genetics/metabolism
OTO - NOTNLM
OT  - Araucana
OT  - Korean cattle
OT  - Korean domestic
OT  - MC1R
OT  - SLCO1B3
OT  - White Leghorn
EDAT- 2016/02/09 06:00
MHDA- 2016/06/15 06:00
CRDT- 2016/02/09 06:00
PHST- 2016/02/09 06:00 [entrez]
PHST- 2016/02/09 06:00 [pubmed]
PHST- 2016/06/15 06:00 [medline]
AID - 10.2108/zs150071 [doi]
PST - ppublish
SO  - Zoolog Sci. 2016 Feb;33(1):73-7. doi: 10.2108/zs150071.