PMID- 27323031
OWN - NLM
STAT- MEDLINE
DCOM- 20170315
LR  - 20170315
IS  - 1676-5680 (Electronic)
IS  - 1676-5680 (Linking)
VI  - 15
IP  - 2
DP  - 2016 May 13
TI  - Mitochondrial genome of the shorthead catfish (Pelteobagrus eupogon): structure, 
      phylogeny, and intraspecific variation.
LID - 10.4238/gmr.15028634 [doi]
AB  - The complete 16,532-nucleotide sequence of the mitochondrial genome of the 
      shorthead catfish (Pelteobagrus eupogon) was determined using the long and 
      accurate polymerase chain reaction method, and compared with the mitochondrial 
      genome sequences of 49 other catfish species belonging to the order Siluriformes. 
      The locations of protein-coding genes and ribosomal ribonucleic acids (RNAs) were 
      identified by comparison with known sequences of other catfishes, including P. 
      fulvidraco and P. nitidus. The P. eupogon mitochondrial genome was composed of 13 
      protein-coding genes, two ribosomal RNAs, 22 transfer RNA genes, and a non-coding 
      control region. The gene order was identical to that of other Siluriformes. 
      Phylogenetic analyses based on mitochondrial 12S ribosomal RNA, 16S ribosomal 
      RNA, and 13 protein-coding gene sequence data sets were carried out to further 
      clarify the relative phylogenetic position of P. eupogon, and identify 
      phylogenetic relationships among 24 families of Siluriformes. Phylogenetic 
      analyses Randomized Axelerated Maximum Likelihood (RAxML) 8.0.X were congruent 
      with a basal split of the order into Clupeiformes, Characiformes, Cypriniformes, 
      and Siluriformes, and supported a closer relationship of P. eupogon with 
      Amblycipitidae than Siluridae. We therefore concluded that this species appears 
      to be closely related to the Amblycipitidae. In the phylogenetic tree, the 
      Amblycipitidae appeared as the most basal extant lineage within the Siluriformes, 
      while the Bagridae appeared as the sister group of Cranoglanididae and 
      Pangasiidae. The mitochondrial genome sequence of P. eupogon has been deposited 
      in GenBank (accession No. KJ001784).
FAU - Wang, R-Q
AU  - Wang RQ
AD  - Department of Biology, Zunyi Normal College, Zunyi, Guizhou, China.
FAU - Wang, D-Z
AU  - Wang DZ
AD  - Department of Biology, Zunyi Normal College, Zunyi, Guizhou, China.
FAU - Li, C-T
AU  - Li CT
AD  - Department of Biology, Zunyi Normal College, Zunyi, Guizhou, China.
FAU - Yang, X-R
AU  - Yang XR
AD  - Department of Biology, Zunyi Normal College, Zunyi, Guizhou, China.
LA  - eng
PT  - Journal Article
DEP - 20160513
PL  - Brazil
TA  - Genet Mol Res
JT  - Genetics and molecular research : GMR
JID - 101169387
RN  - 0 (DNA, Mitochondrial)
SB  - IM
MH  - Animals
MH  - Catfishes/*genetics
MH  - DNA, Mitochondrial/genetics
MH  - Gene Order
MH  - *Genome, Mitochondrial
MH  - Open Reading Frames
MH  - Phylogeny
MH  - Polymerase Chain Reaction/methods
MH  - Sequence Analysis, DNA
EDAT- 2016/06/21 06:00
MHDA- 2017/03/16 06:00
CRDT- 2016/06/21 06:00
PHST- 2016/06/21 06:00 [entrez]
PHST- 2016/06/21 06:00 [pubmed]
PHST- 2017/03/16 06:00 [medline]
AID - gmr8634 [pii]
AID - 10.4238/gmr.15028634 [doi]
PST - epublish
SO  - Genet Mol Res. 2016 May 13;15(2). doi: 10.4238/gmr.15028634.