PMID- 28090199
OWN - NLM
STAT- PubMed-not-MEDLINE
LR  - 20191120
IS  - 1573-3882 (Print)
IS  - 1573-3890 (Electronic)
IS  - 1573-3882 (Linking)
VI  - 13
IP  - 2
DP  - 2017
TI  - MASTR-MS: a web-based collaborative laboratory information management system 
      (LIMS) for metabolomics.
PG  - 14
LID - 10.1007/s11306-016-1142-2 [doi]
LID - 14
AB  - BACKGROUND: An increasing number of research laboratories and core analytical 
      facilities around the world are developing high throughput metabolomic analytical 
      and data processing pipelines that are capable of handling hundreds to thousands 
      of individual samples per year, often over multiple projects, collaborations and 
      sample types. At present, there are no Laboratory Information Management Systems 
      (LIMS) that are specifically tailored for metabolomics laboratories that are 
      capable of tracking samples and associated metadata from the beginning to the end 
      of an experiment, including data processing and archiving, and which are also 
      suitable for use in large institutional core facilities or multi-laboratory 
      consortia as well as single laboratory environments. RESULTS: Here we present 
      MASTR-MS, a downloadable and installable LIMS solution that can be deployed 
      either within a single laboratory or used to link workflows across a multisite 
      network. It comprises a Node Management System that can be used to link and 
      manage projects across one or multiple collaborating laboratories; a User 
      Management System which defines different user groups and privileges of users; a 
      Quote Management System where client quotes are managed; a Project Management 
      System in which metadata is stored and all aspects of project management, 
      including experimental setup, sample tracking and instrument analysis, are 
      defined, and a Data Management System that allows the automatic capture and 
      storage of raw and processed data from the analytical instruments to the LIMS. 
      CONCLUSION: MASTR-MS is a comprehensive LIMS solution specifically designed for 
      metabolomics. It captures the entire lifecycle of a sample starting from project 
      and experiment design to sample analysis, data capture and storage. It acts as an 
      electronic notebook, facilitating project management within a single laboratory 
      or a multi-node collaborative environment. This software is being developed in 
      close consultation with members of the metabolomics research community. It is 
      freely available under the GNU GPL v3 licence and can be accessed from, 
      https://muccg.github.io/mastr-ms/.
FAU - Hunter, Adam
AU  - Hunter A
AD  - Australian Bioinformatics Facility, Centre for Comparative Genomics, Murdoch 
      University, Murdoch, WA 6150 Australia. ISNI: 0000 0004 0436 6763. GRID: 
      grid.1025.6
FAU - Dayalan, Saravanan
AU  - Dayalan S
AD  - Metabolomics Australia, The University of Melbourne, Melbourne, VIC 3010 
      Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
AD  - Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 
      Melbourne, VIC 3010 Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
FAU - De Souza, David
AU  - De Souza D
AD  - Metabolomics Australia, The University of Melbourne, Melbourne, VIC 3010 
      Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
AD  - Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 
      Melbourne, VIC 3010 Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
FAU - Power, Brad
AU  - Power B
AD  - Australian Bioinformatics Facility, Centre for Comparative Genomics, Murdoch 
      University, Murdoch, WA 6150 Australia. ISNI: 0000 0004 0436 6763. GRID: 
      grid.1025.6
FAU - Lorrimar, Rodney
AU  - Lorrimar R
AD  - Australian Bioinformatics Facility, Centre for Comparative Genomics, Murdoch 
      University, Murdoch, WA 6150 Australia. ISNI: 0000 0004 0436 6763. GRID: 
      grid.1025.6
FAU - Szabo, Tamas
AU  - Szabo T
AD  - Australian Bioinformatics Facility, Centre for Comparative Genomics, Murdoch 
      University, Murdoch, WA 6150 Australia. ISNI: 0000 0004 0436 6763. GRID: 
      grid.1025.6
FAU - Nguyen, Thu
AU  - Nguyen T
AD  - Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 
      Melbourne, VIC 3010 Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
FAU - O'Callaghan, Sean
AU  - O'Callaghan S
AD  - Metabolomics Australia, The University of Melbourne, Melbourne, VIC 3010 
      Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
AD  - Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 
      Melbourne, VIC 3010 Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
FAU - Hack, Jeremy
AU  - Hack J
AD  - Metabolomics Australia, The Australian Wine Research Institute, Adelaide, SA 5064 
      Australia. ISNI: 0000 0004 0405 222X. GRID: grid.452839.1
FAU - Pyke, James
AU  - Pyke J
AD  - Metabolomics Australia, The University of Melbourne, Melbourne, VIC 3010 
      Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
AD  - Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 
      Melbourne, VIC 3010 Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
FAU - Nahid, Amsha
AU  - Nahid A
AD  - Australian Bioinformatics Facility, Centre for Comparative Genomics, Murdoch 
      University, Murdoch, WA 6150 Australia. ISNI: 0000 0004 0436 6763. GRID: 
      grid.1025.6
AD  - Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 
      Melbourne, VIC 3010 Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
FAU - Barrero, Roberto
AU  - Barrero R
AD  - Australian Bioinformatics Facility, Centre for Comparative Genomics, Murdoch 
      University, Murdoch, WA 6150 Australia. ISNI: 0000 0004 0436 6763. GRID: 
      grid.1025.6
FAU - Roessner, Ute
AU  - Roessner U
AD  - Metabolomics Australia, The University of Melbourne, Melbourne, VIC 3010 
      Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
AD  - School of Biosciences, The University of Melbourne, Melbourne, VIC 3010 
      Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
FAU - Likic, Vladimir
AU  - Likic V
AD  - Metabolomics Australia, The University of Melbourne, Melbourne, VIC 3010 
      Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
FAU - Tull, Dedreia
AU  - Tull D
AD  - Metabolomics Australia, The University of Melbourne, Melbourne, VIC 3010 
      Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
AD  - Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 
      Melbourne, VIC 3010 Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
FAU - Bacic, Antony
AU  - Bacic A
AD  - Metabolomics Australia, The University of Melbourne, Melbourne, VIC 3010 
      Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
AD  - Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 
      Melbourne, VIC 3010 Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
AD  - ARC Centre of Excellence in Plant Cell Walls, School of Biosciences, The 
      University of Melbourne, Melbourne, VIC 3010 Australia. ISNI: 0000 0001 2179 
      088X. GRID: grid.1008.9
FAU - McConville, Malcolm
AU  - McConville M
AD  - Metabolomics Australia, The University of Melbourne, Melbourne, VIC 3010 
      Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
AD  - Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, 
      Melbourne, VIC 3010 Australia. ISNI: 0000 0001 2179 088X. GRID: grid.1008.9
FAU - Bellgard, Matthew
AU  - Bellgard M
AD  - Australian Bioinformatics Facility, Centre for Comparative Genomics, Murdoch 
      University, Murdoch, WA 6150 Australia. ISNI: 0000 0004 0436 6763. GRID: 
      grid.1025.6
LA  - eng
PT  - Journal Article
DEP - 20161227
PL  - United States
TA  - Metabolomics
JT  - Metabolomics : Official journal of the Metabolomic Society
JID - 101274889
PMC - PMC5192047
OTO - NOTNLM
OT  - LIMS
OT  - MASTR-MS
OT  - Metabolomics
OT  - Omics
COIS- All authors declare that they have no conflicts of interest. Ethical approval 
      This article does not contain any studies with human participants or animals 
      performed by any of the authors.
EDAT- 2017/01/17 06:00
MHDA- 2017/01/17 06:01
PMCR- 2016/12/27
CRDT- 2017/01/17 06:00
PHST- 2016/08/18 00:00 [received]
PHST- 2016/11/26 00:00 [accepted]
PHST- 2017/01/17 06:00 [entrez]
PHST- 2017/01/17 06:00 [pubmed]
PHST- 2017/01/17 06:01 [medline]
PHST- 2016/12/27 00:00 [pmc-release]
AID - 1142 [pii]
AID - 10.1007/s11306-016-1142-2 [doi]
PST - ppublish
SO  - Metabolomics. 2017;13(2):14. doi: 10.1007/s11306-016-1142-2. Epub 2016 Dec 27.