PMID- 29257654
OWN - NLM
STAT- MEDLINE
DCOM- 20180219
LR  - 20180219
IS  - 0254-8704 (Print)
IS  - 0254-8704 (Linking)
VI  - 37
IP  - 6
DP  - 2016 Nov
TI  - Genetic diversity assessment of Fusarium oxysporum f. sp ciceris isolates of 
      Indian chickpea fields as revealed by the SRAP marker system.
PG  - 1291-97
AB  - An experiment was conducted to study the precise geographical distribution and 
      racial complexity of Fusarium oxysporum f.sp ciceris (Foc) isolates representing 
      12 states of 4 agro-climatic zones of India at morphological, pathogenic and 
      molecular level. The DNA based sequence related amplified polymorphism (SRAP) 
      markers was employed to differentiate Foc isolates at genome level. The genotypic 
      data output of the isolates was examined for diversity parameter as marker's 
      Polymorphic percentage (PM %), Polymorphic Information Content (PIC), Marker 
      Index (MI) and Gene Diversity Index (DI). As a result, 15 primers used in this 
      study could generated total of 154 reproducible alleles ranging from 100-2100 bp 
      (average allele per marker 10.26) in size, of that 149 (97%) were found to be 
      polymorphic. The neighbor-joining analysis effectively classified the isolates of 
      North East Plain Zone (NEPZ), Central Zone (CZ), North West Plain Zone (NWPZ) and 
      South Zone (SZ) into four clusters. In summary, DNA based marker analysis could 
      differentiate as per isolates geographical location, however pathogenic 
      interaction of isolates from same geographical location could not match the 
      genetic differentiation. Accordingly, considering the present complexity in 
      racial profile, precise classification based on homologs virulence genes specific 
      to races would give a more meaningful in correlating isolates with their native 
      geographical distribution and helps in future resistance breeding programs for 
      sustainable management of vascular wilt disease.
FAU - Soren, K R
AU  - Soren KR
FAU - Gangwar, Priyanka
AU  - Gangwar P
FAU - Khatterwani, Payal
AU  - Khatterwani P
FAU - Chaudhary, Ram Ganesh
AU  - Chaudhary RG
FAU - Datta, Subhojit
AU  - Datta S
LA  - eng
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
PL  - India
TA  - J Environ Biol
JT  - Journal of environmental biology
JID - 8300544
RN  - 0 (Genetic Markers)
SB  - IM
MH  - Cicer/*microbiology
MH  - Fusarium/genetics
MH  - *Genetic Markers
MH  - *Genetic Variation
MH  - India
MH  - Nucleic Acid Amplification Techniques
MH  - Plant Diseases/*microbiology
OTO - NOTNLM
OT  - *Genetic diversity
OT  - *Focisolate
OT  - *Pathogenicity
OT  - *Population structure
OT  - *Racial profiling
OT  - *SRAP maker
EDAT- 2017/12/20 06:00
MHDA- 2018/02/20 06:00
CRDT- 2017/12/20 06:00
PHST- 2017/12/20 06:00 [entrez]
PHST- 2017/12/20 06:00 [pubmed]
PHST- 2018/02/20 06:00 [medline]
PST - ppublish
SO  - J Environ Biol. 2016 Nov;37(6):1291-97.