PMID- 29500570
OWN - NLM
STAT- MEDLINE
DCOM- 20180529
LR  - 20180529
IS  - 1432-8798 (Electronic)
IS  - 0304-8608 (Linking)
VI  - 163
IP  - 6
DP  - 2018 Jun
TI  - Discovery of a novel geminivirus associated with camellia chlorotic dwarf 
      disease.
PG  - 1709-1712
LID - 10.1007/s00705-018-3780-3 [doi]
AB  - Next-generation sequencing of small RNAs and PCR amplification with two pairs of 
      back-to-back primers, followed by cloning and sequencing, allowed identification 
      of a novel geminivirus isolate provisionally named camellia chlorotic 
      dwarf-associated virus (CaCDaV). The complete genome sequence of CaCDaV comprises 
      3,687 nucleotides (nts) and six open reading frames (ORFs). The genome and 
      putative proteins of CaCDaV were most closely related to those of two 
      unclassified geminiviruses: citrus chlorotic dwarf-associated virus (CCDaV, 3,640 
      nt) and mulberry mosaic dwarf-associated virus (MMDaV, 2,952 nt). Phylogenetic 
      analysis revealed a distinct clade for CaCDaV, CCDaV and MMDaV, supporting their 
      inclusion in a new genus within the family Geminiviridae. Because CaCDaV and 
      CCDaV shared a high genome nucleotide sequence identity (54.8%), we propose that 
      the CaCDaV should be included as a member in this new genus.
FAU - Zhang, Song
AU  - Zhang S
AD  - National Citrus Engineering Research Center, Citrus Research Institute, Southwest 
      University, Chongqing, 400712, China.
AD  - Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
FAU - Shen, Pan
AU  - Shen P
AD  - National Citrus Engineering Research Center, Citrus Research Institute, Southwest 
      University, Chongqing, 400712, China.
AD  - Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
FAU - Li, Min
AU  - Li M
AD  - National Citrus Engineering Research Center, Citrus Research Institute, Southwest 
      University, Chongqing, 400712, China.
AD  - Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
FAU - Tian, Xin
AU  - Tian X
AD  - National Citrus Engineering Research Center, Citrus Research Institute, Southwest 
      University, Chongqing, 400712, China.
AD  - Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China.
FAU - Zhou, Changyong
AU  - Zhou C
AD  - National Citrus Engineering Research Center, Citrus Research Institute, Southwest 
      University, Chongqing, 400712, China. zhoucy@cric.cn.
AD  - Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China. 
      zhoucy@cric.cn.
FAU - Cao, Mengji
AU  - Cao M
AUID- ORCID: 0000-0003-0396-262X
AD  - National Citrus Engineering Research Center, Citrus Research Institute, Southwest 
      University, Chongqing, 400712, China. caomengji@cric.cn.
AD  - Academy of Agricultural Sciences, Southwest University, Chongqing, 400715, China. 
      caomengji@cric.cn.
LA  - eng
GR  - 31501611/National Natural Science Foundation of China/
GR  - cstc2017jcyjBX0016/Chongqing Research Program of Basic Research and Frontier 
      Technology/
GR  - XDJK2016B021/Fundamental Research Funds for the Central Universities/
GR  - SWU116012/Fundamental Research Funds for the Central Universities/
GR  - cstc2016shms-ztzx80003/Chongqing Science and Technology Commission Project/
PT  - Journal Article
DEP - 20180302
PL  - Austria
TA  - Arch Virol
JT  - Archives of virology
JID - 7506870
SB  - IM
MH  - Camellia/*virology
MH  - Cloning, Molecular
MH  - Founder Effect
MH  - Geminiviridae/classification/*genetics/isolation & purification
MH  - *Genome, Viral
MH  - High-Throughput Nucleotide Sequencing
MH  - *Open Reading Frames
MH  - Phylogeny
MH  - Plant Diseases/*virology
MH  - Whole Genome Sequencing
EDAT- 2018/03/04 06:00
MHDA- 2018/05/31 06:00
CRDT- 2018/03/04 06:00
PHST- 2017/11/16 00:00 [received]
PHST- 2018/01/22 00:00 [accepted]
PHST- 2018/03/04 06:00 [pubmed]
PHST- 2018/05/31 06:00 [medline]
PHST- 2018/03/04 06:00 [entrez]
AID - 10.1007/s00705-018-3780-3 [pii]
AID - 10.1007/s00705-018-3780-3 [doi]
PST - ppublish
SO  - Arch Virol. 2018 Jun;163(6):1709-1712. doi: 10.1007/s00705-018-3780-3. Epub 2018 
      Mar 2.