PMID- 29850778
OWN - NLM
STAT- MEDLINE
DCOM- 20191021
LR  - 20191101
IS  - 1367-4811 (Electronic)
IS  - 1367-4803 (Print)
IS  - 1367-4803 (Linking)
VI  - 34
IP  - 21
DP  - 2018 Nov 1
TI  - NGL viewer: web-based molecular graphics for large complexes.
PG  - 3755-3758
LID - 10.1093/bioinformatics/bty419 [doi]
AB  - MOTIVATION: The interactive visualization of very large macromolecular complexes 
      on the web is becoming a challenging problem as experimental techniques advance 
      at an unprecedented rate and deliver structures of increasing size. RESULTS: We 
      have tackled this problem by developing highly memory-efficient and scalable 
      extensions for the NGL WebGL-based molecular viewer and by using Macromolecular 
      Transmission Format (MMTF), a binary and compressed MMTF. These enable NGL to 
      download and render molecular complexes with millions of atoms interactively on 
      desktop computers and smartphones alike, making it a tool of choice for web-based 
      molecular visualization in research and education. AVAILABILITY AND 
      IMPLEMENTATION: The source code is freely available under the MIT license at 
      github.com/arose/ngl and distributed on NPM (npmjs.com/package/ngl). 
      MMTF-JavaScript encoders and decoders are available at 
      github.com/rcsb/mmtf-javascript.
FAU - Rose, Alexander S
AU  - Rose AS
AD  - RCSB Protein Data Bank.
AD  - San Diego Supercomputer Center, UC San Diego, CA, USA.
FAU - Bradley, Anthony R
AU  - Bradley AR
AD  - RCSB Protein Data Bank.
AD  - San Diego Supercomputer Center, UC San Diego, CA, USA.
FAU - Valasatava, Yana
AU  - Valasatava Y
AD  - San Diego Supercomputer Center, UC San Diego, CA, USA.
FAU - Duarte, Jose M
AU  - Duarte JM
AD  - RCSB Protein Data Bank.
AD  - San Diego Supercomputer Center, UC San Diego, CA, USA.
FAU - Prlic, Andreas
AU  - Prlic A
AD  - RCSB Protein Data Bank.
AD  - San Diego Supercomputer Center, UC San Diego, CA, USA.
FAU - Rose, Peter W
AU  - Rose PW
AD  - RCSB Protein Data Bank.
AD  - San Diego Supercomputer Center, UC San Diego, CA, USA.
LA  - eng
GR  - U01 CA198942/CA/NCI NIH HHS/United States
PT  - Journal Article
PT  - Research Support, N.I.H., Extramural
PT  - Research Support, U.S. Gov't, Non-P.H.S.
PL  - England
TA  - Bioinformatics
JT  - Bioinformatics (Oxford, England)
JID - 9808944
RN  - 0 (Macromolecular Substances)
SB  - IM
MH  - *Computer Graphics
MH  - *Internet
MH  - *Macromolecular Substances
MH  - *Software
PMC - PMC6198858
EDAT- 2018/06/01 06:00
MHDA- 2019/10/23 06:00
PMCR- 2019/11/01
CRDT- 2018/06/01 06:00
PHST- 2017/08/15 00:00 [received]
PHST- 2018/05/22 00:00 [accepted]
PHST- 2018/06/01 06:00 [pubmed]
PHST- 2019/10/23 06:00 [medline]
PHST- 2018/06/01 06:00 [entrez]
PHST- 2019/11/01 00:00 [pmc-release]
AID - 5021685 [pii]
AID - bty419 [pii]
AID - 10.1093/bioinformatics/bty419 [doi]
PST - ppublish
SO  - Bioinformatics. 2018 Nov 1;34(21):3755-3758. doi: 10.1093/bioinformatics/bty419.