PMID- 30037137
OWN - NLM
STAT- MEDLINE
DCOM- 20181026
LR  - 20181114
IS  - 1422-0067 (Electronic)
IS  - 1422-0067 (Linking)
VI  - 19
IP  - 7
DP  - 2018 Jul 22
TI  - Genome-Wide Identification and Characterization of CIPK Family and Analysis 
      Responses to Various Stresses in Apple (Malus domestica).
LID - 10.3390/ijms19072131 [doi]
LID - 2131
AB  - In the CIPK family, the CBL-interacting protein kinases have shown crucial roles 
      in hormone signaling transduction, and response to abiotic stress in plant 
      developmental processes. The CIPK family is characterized by conserved NAF/FISL 
      (Asn-Ala-Phe) and PPI (protein-phosphatase interaction) domains in the 
      C-terminus. However, little data has been reported about the CIPK family in 
      apple. A total of 34 MdCIPK genes were identified from the apple genome in this 
      study and were later divided into two groups according to the CIPK domains, 
      characterized by gene structure and chromosomal distribution, and then mapped 
      onto 17 chromosomes. All MdCIPK genes were expressed in the four apple tissues 
      (leaf, root, flower, and fruit). In addition, the MdCIPK gene expression profile 
      showed that five members among them revealed enhanced expression during the 
      pollen tube growth stages. The MdCIPK4 was the most expressive during the entire 
      fruit development stages. Under stress conditions 21 MdCIPK genes transcript 
      levels were up-regulated in response to fungal and salt treatments. This 
      suggested the possible features of these genes' response to stresses in apples. 
      Our findings provide a new insight about the roles of CIPK genes in apples, which 
      could contribute to the cloning and functional analysis of CIPK genes in the 
      future.
FAU - Niu, Lili
AU  - Niu L
AD  - Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry 
      University, Harbin 150040, China. niulili0613@126.com.
FAU - Dong, Biying
AU  - Dong B
AD  - The College of Forestry, Beijing Forestry University, Beijing 100083, China. 
      dongbiying1029@163.com.
FAU - Song, Zhihua
AU  - Song Z
AD  - The College of Forestry, Beijing Forestry University, Beijing 100083, China. 
      szhxf0801@163.com.
FAU - Meng, Dong
AU  - Meng D
AUID- ORCID: 0000-0002-4580-4673
AD  - The College of Forestry, Beijing Forestry University, Beijing 100083, China. 
      mengdongjlf@163.com.
AD  - Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing 
      Forestry University, Beijing 100083, China. mengdongjlf@163.com.
FAU - Fu, Yujie
AU  - Fu Y
AD  - Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry 
      University, Harbin 150040, China. yujie_fu@163.com.
AD  - The College of Forestry, Beijing Forestry University, Beijing 100083, China. 
      yujie_fu@163.com.
AD  - Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing 
      Forestry University, Beijing 100083, China. yujie_fu@163.com.
LA  - eng
PT  - Journal Article
DEP - 20180722
PL  - Switzerland
TA  - Int J Mol Sci
JT  - International journal of molecular sciences
JID - 101092791
RN  - 0 (Plant Proteins)
RN  - 451W47IQ8X (Sodium Chloride)
SB  - IM
MH  - Cold Temperature
MH  - Gene Expression Regulation, Plant/drug effects/genetics
MH  - Genome, Plant/genetics
MH  - Malus/*drug effects/genetics/*metabolism
MH  - Phylogeny
MH  - Plant Proteins/classification/genetics/*metabolism
MH  - Sodium Chloride/pharmacology
MH  - Stress, Physiological
PMC - PMC6073193
OTO - NOTNLM
OT  - CIPK genes
OT  - Malus domestica
OT  - expression pattern
OT  - phylogeny
OT  - stress
COIS- The authors declare no conflict of interest.
EDAT- 2018/07/25 06:00
MHDA- 2018/10/27 06:00
PMCR- 2018/07/01
CRDT- 2018/07/25 06:00
PHST- 2018/06/23 00:00 [received]
PHST- 2018/07/16 00:00 [revised]
PHST- 2018/07/17 00:00 [accepted]
PHST- 2018/07/25 06:00 [entrez]
PHST- 2018/07/25 06:00 [pubmed]
PHST- 2018/10/27 06:00 [medline]
PHST- 2018/07/01 00:00 [pmc-release]
AID - ijms19072131 [pii]
AID - ijms-19-02131 [pii]
AID - 10.3390/ijms19072131 [doi]
PST - epublish
SO  - Int J Mol Sci. 2018 Jul 22;19(7):2131. doi: 10.3390/ijms19072131.