PMID- 30168910
OWN - NLM
STAT- MEDLINE
DCOM- 20190408
LR  - 20190408
IS  - 1934-340X (Electronic)
IS  - 1934-3396 (Linking)
VI  - 63
IP  - 1
DP  - 2018 Sep
TI  - Installing, Maintaining, and Using a Local Copy of BLAST for Compute Cluster or 
      Workstation Use.
PG  - e54
LID - 10.1002/cpbi.54 [doi]
AB  - The Basic Local Alignment Search Tool (BLAST) is the first resource to 
      computationally characterize a novel amino acid or nucleic acid sequence. BLAST 
      plays important roles in genomics, transcriptomics, and protein science. For 
      numerous academic and commercial researchers, neither BLAST Web servers nor cloud 
      resources satisfy the requirements of high-throughput comparative genomic 
      pipelines or company policies. For such users, this unit describes how to install 
      BLAST locally, either on a standalone workstation, or preferably on a compute 
      cluster. We provide practical guidance for the planning and the installation 
      under the LINUX, Windows, and Mac OS X operating systems. We propose strategies 
      for downloading existing and generating new sequence databases in BLAST format. (c) 
      2018 by John Wiley & Sons, Inc.
CI  - (c) 2018 John Wiley & Sons, Inc.
FAU - Ladunga, Istvan
AU  - Ladunga I
AD  - Departments of Statistics, Biochemistry, and School of Biological Sciences, 
      University of Nebraska-Lincoln, Lincoln, Nebraska.
LA  - eng
PT  - Journal Article
DEP - 20180831
PL  - United States
TA  - Curr Protoc Bioinformatics
JT  - Current protocols in bioinformatics
JID - 101157830
SB  - IM
MH  - *Algorithms
MH  - Databases, Nucleic Acid
MH  - Sequence Alignment/*methods
OTO - NOTNLM
OT  - BLAST
OT  - LINUX
OT  - biosequence analysis
OT  - sequence similarity search
EDAT- 2018/09/01 06:00
MHDA- 2019/04/09 06:00
CRDT- 2018/09/01 06:00
PHST- 2018/09/01 06:00 [pubmed]
PHST- 2019/04/09 06:00 [medline]
PHST- 2018/09/01 06:00 [entrez]
AID - 10.1002/cpbi.54 [doi]
PST - ppublish
SO  - Curr Protoc Bioinformatics. 2018 Sep;63(1):e54. doi: 10.1002/cpbi.54. Epub 2018 
      Aug 31.