PMID- 31931859 OWN - NLM STAT- MEDLINE DCOM- 20200608 LR - 20200608 IS - 1756-0500 (Electronic) IS - 1756-0500 (Linking) VI - 13 IP - 1 DP - 2020 Jan 13 TI - Comparison of acridine orange fluorescent microscopy and gram stain light microscopy for the rapid detection of bacteria in cerebrospinal fluid. PG - 29 LID - 10.1186/s13104-020-4895-7 [doi] LID - 29 AB - OBJECTIVE: Bacterial meningitis is a life threatening condition that requires prompt recognition and treatment. Currently, Gram stain is widely used for the microscopic detection of bacterial pathogens in cerebrospinal fluid (CSF). In Nepal, fluorescent microscopes have been installed in laboratories as a part of the National tuberculosis control program. However, information on the utility of the acridine orange (AO) stain for the direct detection of bacteria in CSF samples in Nepal is not available. Therefore, this study aims to compare Gram stain and AO stain for the rapid detection of bacterial pathogens in CSF of clinically suspected meningitis cases in Kathmandu, Nepal. RESULTS: Bacterial pathogens were detected in 9.30% (36/387) by either of the three tests, 9.04% (35/387) by AO stain, 8.27% (32/387) by culture and 6.46% (25/387) by Gram's stain. Considering culture as a gold standard, the sensitivity of AO stain was higher than Gram stain. The specificity of AO stain was 98.87%. Detection and differentiation of the bacteria was much clear in AO staining than Gram staining. AO is a better alternative to Gram stain in the rapid detection of bacterial pathogens in CSF in the setting where fluorescent microscope is available. FAU - Sharma, Supriya AU - Sharma S AUID- ORCID: 0000-0002-0149-1732 AD - Central Department of Microbiology, Tribhuvan University, Kirtipur, Kathmandu, Nepal. suprisharma@hotmail.com. FAU - Acharya, Jyoti AU - Acharya J AD - National Public Health Laboratory, Teku, Kathmandu, Nepal. FAU - Banjara, Megha Raj AU - Banjara MR AD - Central Department of Microbiology, Tribhuvan University, Kirtipur, Kathmandu, Nepal. FAU - Ghimire, Prakash AU - Ghimire P AD - Central Department of Microbiology, Tribhuvan University, Kirtipur, Kathmandu, Nepal. FAU - Singh, Anjana AU - Singh A AD - Central Department of Microbiology, Tribhuvan University, Kirtipur, Kathmandu, Nepal. LA - eng GR - PhD/73-74/S&T-01)/University Grants Commission- Nepal/ PT - Comparative Study PT - Journal Article DEP - 20200113 PL - England TA - BMC Res Notes JT - BMC research notes JID - 101462768 RN - 0 (Coloring Agents) RN - 0 (Fluorescent Dyes) RN - 0 (Gram's stain) RN - 0 (Phenazines) RN - F30N4O6XVV (Acridine Orange) RN - J4Z741D6O5 (Gentian Violet) SB - IM MH - *Acridine Orange/chemistry MH - Bacteria/*isolation & purification/pathogenicity MH - Cerebrospinal Fluid/*microbiology MH - Coloring Agents MH - *Fluorescent Dyes/chemistry MH - Gentian Violet/chemistry MH - Meningitis, Bacterial/*diagnosis/microbiology MH - Microscopy MH - *Microscopy, Fluorescence MH - Nepal MH - Phenazines/chemistry MH - Sensitivity and Specificity MH - Staining and Labeling PMC - PMC6958790 OTO - NOTNLM OT - Acridine orange stain OT - Bacterial meningitis OT - Culture OT - Gram stain COIS- The authors declare that they have no competing interests. EDAT- 2020/01/15 06:00 MHDA- 2020/06/09 06:00 PMCR- 2020/01/13 CRDT- 2020/01/15 06:00 PHST- 2019/09/04 00:00 [received] PHST- 2020/01/06 00:00 [accepted] PHST- 2020/01/15 06:00 [entrez] PHST- 2020/01/15 06:00 [pubmed] PHST- 2020/06/09 06:00 [medline] PHST- 2020/01/13 00:00 [pmc-release] AID - 10.1186/s13104-020-4895-7 [pii] AID - 4895 [pii] AID - 10.1186/s13104-020-4895-7 [doi] PST - epublish SO - BMC Res Notes. 2020 Jan 13;13(1):29. doi: 10.1186/s13104-020-4895-7.