PMID- 32180790
OWN - NLM
STAT- PubMed-not-MEDLINE
LR  - 20200928
IS  - 1664-8021 (Print)
IS  - 1664-8021 (Electronic)
IS  - 1664-8021 (Linking)
VI  - 10
DP  - 2019
TI  - Genome-Wide Association Studies and Genomic Selection in Pearl Millet: Advances 
      and Prospects.
PG  - 1389
LID - 10.3389/fgene.2019.01389 [doi]
LID - 1389
AB  - Pearl millet is a climate-resilient, drought-tolerant crop capable of growing in 
      marginal environments of arid and semi-arid regions globally. Pearl millet is a 
      staple food for more than 90 million people living in poverty and can address the 
      triple burden of malnutrition substantially. It remained a neglected crop until 
      the turn of the 21st century, and much emphasis has been placed since then on the 
      development of various genetic and genomic resources for whole-genome scan 
      studies, such as the genome-wide association studies (GWAS) and genomic selection 
      (GS). This was facilitated by the advent of sequencing-based genotyping, such as 
      genotyping-by-sequencing (GBS), RAD-sequencing, and whole-genome re-sequencing 
      (WGRS) in pearl millet. To carry out GWAS and GS, a world association mapping 
      panel called the Pearl Millet inbred Germplasm Association Panel (PMiGAP) was 
      developed at ICRISAT in partnership with Aberystwyth University. This panel 
      consisted of germplasm lines, landraces, and breeding lines from 27 countries and 
      was re-sequenced using the WGRS approach. It has a repository of circa 29 million 
      genome-wide SNPs. PMiGAP has been used to map traits related to drought 
      tolerance, grain Fe and Zn content, nitrogen use efficiency, components of 
      endosperm starch, grain yield, etc. Genomic selection in pearl millet was 
      jump-started recently by WGRS, RAD, and tGBS (tunable genotyping-by-sequencing) 
      approaches for the PMiGAP and hybrid parental lines. Using multi-environment 
      phenotyping of various training populations, initial attempts have been made to 
      develop genomic selection models. This mini review discusses advances and 
      prospects in GWAS and GS for pearl millet.
CI  - Copyright (c) 2020 Srivastava, Singh, Pujarula, Bollam, Pusuluri, Chellapilla, 
      Yadav and Gupta.
FAU - Srivastava, Rakesh K
AU  - Srivastava RK
AD  - International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), 
      Hyderabad, India.
FAU - Singh, Ram B
AU  - Singh RB
AD  - International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), 
      Hyderabad, India.
FAU - Pujarula, Vijaya Lakshmi
AU  - Pujarula VL
AD  - International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), 
      Hyderabad, India.
FAU - Bollam, Srikanth
AU  - Bollam S
AD  - International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), 
      Hyderabad, India.
FAU - Pusuluri, Madhu
AU  - Pusuluri M
AD  - International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), 
      Hyderabad, India.
FAU - Chellapilla, Tara Satyavathi
AU  - Chellapilla TS
AD  - All India Coordinated Research Project on Pearl Millet (AICRP-PM), Indian Council 
      of Agricultural Research (ICAR), Jodhpur, India.
FAU - Yadav, Rattan S
AU  - Yadav RS
AD  - Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth 
      University, Gogerddan, United Kingdom.
FAU - Gupta, Rajeev
AU  - Gupta R
AD  - International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), 
      Hyderabad, India.
LA  - eng
PT  - Journal Article
PT  - Review
DEP - 20200228
PL  - Switzerland
TA  - Front Genet
JT  - Frontiers in genetics
JID - 101560621
PMC - PMC7059752
OTO - NOTNLM
OT  - genetic resources
OT  - genome-wide association studies
OT  - genomic resources
OT  - genomic selection
OT  - molecular markers
OT  - pearl millet
EDAT- 2020/03/18 06:00
MHDA- 2020/03/18 06:01
PMCR- 2020/02/28
CRDT- 2020/03/18 06:00
PHST- 2019/09/20 00:00 [received]
PHST- 2019/12/19 00:00 [accepted]
PHST- 2020/03/18 06:00 [entrez]
PHST- 2020/03/18 06:00 [pubmed]
PHST- 2020/03/18 06:01 [medline]
PHST- 2020/02/28 00:00 [pmc-release]
AID - 10.3389/fgene.2019.01389 [doi]
PST - epublish
SO  - Front Genet. 2020 Feb 28;10:1389. doi: 10.3389/fgene.2019.01389. eCollection 
      2019.