PMID- 32594320
OWN - NLM
STAT- MEDLINE
DCOM- 20200814
LR  - 20200814
IS  - 1432-8798 (Electronic)
IS  - 0304-8608 (Linking)
VI  - 165
IP  - 9
DP  - 2020 Sep
TI  - Porcine reproductive and respiratory syndrome virus: phylogenetic analysis of 
      circulating strains in the Republic of Ireland from 2016 to 2017.
PG  - 2057-2063
LID - 10.1007/s00705-020-04710-7 [doi]
AB  - In order to investigate the genetic diversity of porcine reproductive and 
      respiratory syndrome virus (PRRSV) strains currently circulating in the Republic 
      of Ireland (ROI), the ORF5 gene from 17 field strains originating from four 
      vaccinating commercial herds was sequenced and phylogenetically analysed. High 
      genetic variability was observed between farms at the nucleotide (86.3-95.2%) and 
      amino acid (85.5-96%) levels. Phylogenetic analysis confirmed that all field 
      strains belonged to the European species (type 1) and clustered into three 
      separate groups within the subtype 1 subgroup. This variation may pose challenges 
      for diagnosis and prophylactic control of PRRSV through vaccination in the ROI.
FAU - Fitzgerald, Rose M
AU  - Fitzgerald RM
AUID- ORCID: 0000-0002-0847-1830
AD  - Bio-Explore, Department of Biological Sciences, Cork Institute of Technology, 
      Rossa Avenue, Bishopstown, Cork, T12 P928, Republic of Ireland. 
      rose.fitzgerald@mycit.ie.
FAU - Collins, Patrick J
AU  - Collins PJ
AD  - Veterinary Science Division, Agri-Food and Biosciences Institute, Stormont, 
      Belfast, BT4 3SD, Northern Ireland.
FAU - McMenamey, Michael J
AU  - McMenamey MJ
AD  - Veterinary Science Division, Agri-Food and Biosciences Institute, Stormont, 
      Belfast, BT4 3SD, Northern Ireland.
FAU - Leonard, Finola C
AU  - Leonard FC
AD  - School of Veterinary Medicine, University College Dublin, Belfield, Dublin 4, D04 
      W6F6, Republic of Ireland.
FAU - McGlynn, Hugh
AU  - McGlynn H
AD  - Bio-Explore, Department of Biological Sciences, Cork Institute of Technology, 
      Rossa Avenue, Bishopstown, Cork, T12 P928, Republic of Ireland.
FAU - O'Shea, Helen
AU  - O'Shea H
AD  - Bio-Explore, Department of Biological Sciences, Cork Institute of Technology, 
      Rossa Avenue, Bishopstown, Cork, T12 P928, Republic of Ireland.
LA  - eng
GR  - 14/S/832 (PathSurvPig)/Department of Agriculture, Food and the Marine/
PT  - Journal Article
DEP - 20200627
PL  - Austria
TA  - Arch Virol
JT  - Archives of virology
JID - 7506870
RN  - 0 (Viral Envelope Proteins)
SB  - IM
MH  - Amino Acid Sequence
MH  - Animals
MH  - Genetic Variation
MH  - Genotype
MH  - Ireland/epidemiology
MH  - Open Reading Frames
MH  - *Phylogeny
MH  - Porcine Reproductive and Respiratory Syndrome/epidemiology/*virology
MH  - Porcine respiratory and reproductive syndrome 
      virus/*classification/genetics/*isolation & purification
MH  - Swine
MH  - Viral Envelope Proteins/genetics
EDAT- 2020/07/01 06:00
MHDA- 2020/08/15 06:00
CRDT- 2020/06/29 06:00
PHST- 2020/04/21 00:00 [received]
PHST- 2020/05/22 00:00 [accepted]
PHST- 2020/07/01 06:00 [pubmed]
PHST- 2020/08/15 06:00 [medline]
PHST- 2020/06/29 06:00 [entrez]
AID - 10.1007/s00705-020-04710-7 [pii]
AID - 10.1007/s00705-020-04710-7 [doi]
PST - ppublish
SO  - Arch Virol. 2020 Sep;165(9):2057-2063. doi: 10.1007/s00705-020-04710-7. Epub 2020 
      Jun 27.