PMID- 32719400 OWN - NLM STAT- MEDLINE DCOM- 20201209 LR - 20210727 IS - 2045-2322 (Electronic) IS - 2045-2322 (Linking) VI - 10 IP - 1 DP - 2020 Jul 27 TI - Developing a routine lab test for absolute quantification of HER2 in FFPE breast cancer tissues using Quantitative Dot Blot (QDB) method. PG - 12502 LID - 10.1038/s41598-020-69471-4 [doi] LID - 12502 AB - Developing immunoassay for absolute quantitation of protein biomarkers in Formalin Fixed Paraffin Embedded (FFPE) samples promises improved objectivity, consistency and accuracy in daily clinical practice. The feasibility of Quantitative Dot Blot (QDB) method for this purpose was explored in this study. We were able to measure HER2 protein levels using 0.5 microg/sample total protein lysate extracted from 2 x 5 microm FFPE slices absolutely and quantitatively using QDB method in 332 breast cancer FFPE samples. HER2 levels measured using two clinically validated antibodies for immunohistochemistry respectively were highly correlated (r = 0.963). We also achieved area under the curve (AUC) at 0.9998 +/- 0.0002 (p < 0.0001, n = 224) with IHC analysis, and 0.9942 +/- 0.0031 (p < 0.0001, n = 319) with combined results from IHC and Fluorescence in situ hybridization (FISH) analyses when analyzed with Receiver Operative Characteristics analysis (ROC) respectively. When the results were converted dichotomously with optimized cutoffs from ROC analyses, we achieved 99.5% concordance with IHC; and 96.9% with combined results from both IHC and FISH analyses. Therefore, we were able to demonstrate QDB method as the first immunoassay platform for absolute quantitation of protein biomarkers in FFPE samples to meet the need of daily clinical practice, especially for local laboratories or laboratories in developing countries. FAU - Yu, Guohua AU - Yu G AD - Lab of Molecular Pathology, Dept of Pathology, Affiliated Yuhuangding Hospital of Qingdao University, Yantai, Shandong, People's Republic of China. FAU - Zhang, Wenfeng AU - Zhang W AD - Yantai Quanticision Diagnostics, Inc., a Division of Quanticision Diagnostics, Inc., of USA, Yantai, Shandong, People's Republic of China. FAU - Zhang, Yunyun AU - Zhang Y AD - Yantai Quanticision Diagnostics, Inc., a Division of Quanticision Diagnostics, Inc., of USA, Yantai, Shandong, People's Republic of China. FAU - Lv, Jiahong AU - Lv J AD - Yantai Quanticision Diagnostics, Inc., a Division of Quanticision Diagnostics, Inc., of USA, Yantai, Shandong, People's Republic of China. FAU - Wu, Shishou AU - Wu S AD - Lab of Molecular Pathology, Dept of Pathology, Affiliated Yuhuangding Hospital of Qingdao University, Yantai, Shandong, People's Republic of China. FAU - Sui, Xiaolong AU - Sui X AD - Lab of Molecular Pathology, Dept of Pathology, Affiliated Yuhuangding Hospital of Qingdao University, Yantai, Shandong, People's Republic of China. FAU - Zhang, Jiandi AU - Zhang J AD - Yantai Quanticision Diagnostics, Inc., a Division of Quanticision Diagnostics, Inc., of USA, Yantai, Shandong, People's Republic of China. jiandi.zhang@outlook.com. AD - Center for Precision Medicine, Binzhou Medical University, Yantai, Shandong, People's Republic of China. jiandi.zhang@outlook.com. AD - Quanticision Diagnostics, Inc., 400 Park Offices Dr., Research Triangle Park, NC, 27709, USA. jiandi.zhang@outlook.com. FAU - Tang, Fangrong AU - Tang F AD - Yantai Quanticision Diagnostics, Inc., a Division of Quanticision Diagnostics, Inc., of USA, Yantai, Shandong, People's Republic of China. LA - eng PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20200727 PL - England TA - Sci Rep JT - Scientific reports JID - 101563288 RN - 0 (Neoplasm Proteins) RN - EC 2.7.10.1 (Receptor, ErbB-2) SB - IM MH - Breast Neoplasms/*metabolism/pathology MH - Cell Line, Tumor MH - Female MH - Humans MH - *Immunoblotting MH - Middle Aged MH - Neoplasm Grading MH - Neoplasm Proteins/metabolism MH - *Paraffin Embedding MH - Receptor, ErbB-2/*metabolism MH - Reproducibility of Results MH - *Tissue Fixation PMC - PMC7385113 COIS- WZ, FT, YZ, JL & JZ are employees of Yantai Quanticision Diagnostics, Inc., a division of Quanticision Diagnostics, Inc., who own or has filed patent applications for QDB plate, QDB method, & QDB application in IHC analysis. GY, SW, XS declared no competing interests. EDAT- 2020/07/29 06:00 MHDA- 2020/12/15 06:00 PMCR- 2020/07/27 CRDT- 2020/07/29 06:00 PHST- 2019/11/14 00:00 [received] PHST- 2020/07/02 00:00 [accepted] PHST- 2020/07/29 06:00 [entrez] PHST- 2020/07/29 06:00 [pubmed] PHST- 2020/12/15 06:00 [medline] PHST- 2020/07/27 00:00 [pmc-release] AID - 10.1038/s41598-020-69471-4 [pii] AID - 69471 [pii] AID - 10.1038/s41598-020-69471-4 [doi] PST - epublish SO - Sci Rep. 2020 Jul 27;10(1):12502. doi: 10.1038/s41598-020-69471-4.