PMID- 33126169
OWN - NLM
STAT- MEDLINE
DCOM- 20210602
LR  - 20210602
IS  - 1878-1667 (Electronic)
IS  - 0147-9571 (Linking)
VI  - 73
DP  - 2020 Dec
TI  - Complete genome sequence of a subgenotype XXI.1.1 pigeon paramyxovirus type 1 
      virus (PPMV‑1) isolated from Iran in 2018 and phylogenetic analysis of a possible 
      novel, but unassigned, PPMV-1 group isolated in 2014.
PG  - 101565
LID - S0147-9571(20)30154-5 [pii]
LID - 10.1016/j.cimid.2020.101565 [doi]
AB  - Newcastle disease (ND) is one of the most serious infectious and contagious viral 
      diseases in avian species. Recently, several ND outbreaks in pigeon caused by 
      pigeon paramyxovirus serotype-1 (PPMV-1) have been reported from Iran, but 
      unfortunately, phylogenetic studies have been mostly conducted on partial 
      sequence of NDV fusion (F) gene. In addition, a complete genome data of Iranian 
      PPMV-1 strains are not available. In the present study, a PPMV-1, named Avian 
      avulavirus 1/pigeon/Iran/UT-EGV/2018, isolated from an infected pigeon, was 
      subjected to whole-genome sequencing. The isolate showed an MDT of 74 h, thus 
      categorizing it as mesogenic. The phylogenetic analysis based on the F gene 
      sequence revealed the isolate belongs to XXI.1.1 subgenotype (min 0.9 % and max 3 
      %). To our knowledge, our study is the first study to publish the complete genome 
      of a PPMV-1 from Iran. According to BLAST results, the whole genome of UT-EGV had 
      high homology with some Russian, Egyptian and Ukrainian strains (the highest was 
      96.55 %). Additionally, we conducted a phylogenetic analysis on five PPMV-1 that 
      we isolated in 2014 to find that they may belong to a completely unreported 
      subgenotype (6 % distance when compared as a group). The information obtained 
      from this study can be useful in preventive measures, including constructing an 
      effective vaccine against PPMV-1 in Iran.
CI  - Copyright (c) 2020. Published by Elsevier Ltd.
FAU - Esmaeelzadeh Dizaji, Reza
AU  - Esmaeelzadeh Dizaji R
AD  - Department of Poultry Diseases, Faculty of Veterinary Medicine, University of 
      Tehran, Tehran, Iran.
FAU - Ghalyanchilangeroudi, Arash
AU  - Ghalyanchilangeroudi A
AD  - Department of Microbiology and Immunology, Faculty of Veterinary Medicine, 
      University of Tehran, Tehran, Iran.
FAU - Vasfi Marandi, Mehdi
AU  - Vasfi Marandi M
AD  - Department of Poultry Diseases, Faculty of Veterinary Medicine, University of 
      Tehran, Tehran, Iran. Electronic address: mvmarand@ut.ac.ir.
FAU - Hosseini, Hossein
AU  - Hosseini H
AD  - Department of Clinical Sciences, Faculty of Veterinary Medicine, Islamic Azad 
      University, Karaj Branch, Karaj, Iran.
FAU - Karimi, Vahid
AU  - Karimi V
AD  - Department of Poultry Diseases, Faculty of Veterinary Medicine, University of 
      Tehran, Tehran, Iran.
FAU - Ziafatikafi, Zahra
AU  - Ziafatikafi Z
AD  - Department of Microbiology and Immunology, Faculty of Veterinary Medicine, 
      University of Tehran, Tehran, Iran.
FAU - Molouki, Aidin
AU  - Molouki A
AD  - Department of Poultry Diseases, RAZI Vaccine and Serum Research Institute, 
      Agricultural Research, Education and Extension Organization (AREEO), Tehran, 
      Iran.
FAU - Fallah Mehrabadi, Mohammad Hossein
AU  - Fallah Mehrabadi MH
AD  - Department of Poultry Diseases, RAZI Vaccine and Serum Research Institute, 
      Agricultural Research, Education and Extension Organization (AREEO), Tehran, 
      Iran.
LA  - eng
PT  - Journal Article
DEP - 20201017
PL  - England
TA  - Comp Immunol Microbiol Infect Dis
JT  - Comparative immunology, microbiology and infectious diseases
JID - 7808924
RN  - 0 (RNA, Viral)
SB  - IM
MH  - Animals
MH  - *Columbidae/classification/genetics
MH  - *Genome, Viral
MH  - Iran/epidemiology
MH  - Newcastle Disease/epidemiology/*virology
MH  - Newcastle disease virus/classification/*genetics/pathogenicity
MH  - Phylogeny
MH  - RNA, Viral/genetics/isolation & purification
MH  - Specific Pathogen-Free Organisms
OTO - NOTNLM
OT  - Complete genome
OT  - Epidemiology
OT  - Fusion gene
OT  - Iran
OT  - Phylogenetic study
OT  - Pigeon paramyxovirus serotype-1 (PPMV-1)
EDAT- 2020/10/31 06:00
MHDA- 2021/06/03 06:00
CRDT- 2020/10/30 20:15
PHST- 2019/12/05 00:00 [received]
PHST- 2020/10/03 00:00 [revised]
PHST- 2020/10/08 00:00 [accepted]
PHST- 2020/10/31 06:00 [pubmed]
PHST- 2021/06/03 06:00 [medline]
PHST- 2020/10/30 20:15 [entrez]
AID - S0147-9571(20)30154-5 [pii]
AID - 10.1016/j.cimid.2020.101565 [doi]
PST - ppublish
SO  - Comp Immunol Microbiol Infect Dis. 2020 Dec;73:101565. doi: 
      10.1016/j.cimid.2020.101565. Epub 2020 Oct 17.