PMID- 33380464 OWN - NLM STAT- MEDLINE DCOM- 20210421 LR - 20220402 IS - 1469-9001 (Electronic) IS - 1355-8382 (Print) IS - 1355-8382 (Linking) VI - 27 IP - 4 DP - 2021 Apr TI - Disease-associated mutations in mitochondrial precursor tRNAs affect binding, m1R9 methylation, and tRNA processing by mtRNase P. PG - 420-432 LID - 10.1261/rna.077198.120 [doi] AB - Mitochondrial diseases linked to mutations in mitochondrial (mt) tRNA sequences are common. However, the contributions of these tRNA mutations to the development of diseases is mostly unknown. Mutations may affect interactions with (mt)tRNA maturation enzymes or protein synthesis machinery leading to mitochondrial dysfunction. In human mitochondria, in most cases the first step of tRNA processing is the removal of the 5' leader of precursor tRNAs (pre-tRNA) catalyzed by the three-component enzyme, mtRNase P. Additionally, one component of mtRNase P, mitochondrial RNase P protein 1 (MRPP1), catalyzes methylation of the R9 base in pre-tRNAs. Despite the central role of 5' end processing in mitochondrial tRNA maturation, the link between mtRNase P and diseases is mostly unexplored. Here, we investigate how 11 different human disease-linked mutations in (mt)pre-tRNA(Ile), (mt)pre-tRNA(Leu(UUR)), and (mt)pre-tRNA(Met) affect the activities of mtRNase P. We find that several mutations weaken the pre-tRNA binding affinity (K(D) s are approximately two- to sixfold higher than that of wild-type), while the majority of mutations decrease 5' end processing and methylation activity catalyzed by mtRNase P (up to approximately 55% and 90% reduction, respectively). Furthermore, all of the investigated mutations in (mt)pre-tRNA(Leu(UUR)) alter the tRNA fold which contributes to the partial loss of function of mtRNase P. Overall, these results reveal an etiological link between early steps of (mt)tRNA-substrate processing and mitochondrial disease. CI - (c) 2021 Karasik et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society. FAU - Karasik, Agnes AU - Karasik A AD - Department of Biochemistry and Molecular Biology, Uniformed Services University of the Health Sciences, Bethesda, Maryland 20814, USA. FAU - Wilhelm, Catherine A AU - Wilhelm CA AD - Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA. FAU - Fierke, Carol A AU - Fierke CA AD - Department of Chemistry, Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA. AD - Department of Chemistry, Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843, USA. FAU - Koutmos, Markos AU - Koutmos M AD - Department of Chemistry, Program in Biophysics, University of Michigan, Ann Arbor, Michigan 48109, USA. LA - eng GR - R01 GM055387/GM/NIGMS NIH HHS/United States GR - R01 GM117141/GM/NIGMS NIH HHS/United States PT - Journal Article PT - Research Support, N.I.H., Extramural PT - Research Support, Non-U.S. Gov't DEP - 20201230 PL - United States TA - RNA JT - RNA (New York, N.Y.) JID - 9509184 RN - 0 (RNA Precursors) RN - 0 (RNA, Mitochondrial) RN - 9014-25-9 (RNA, Transfer) RN - EC 2.1.1.- (Methyltransferases) RN - EC 2.1.1.- (TRMT10c protein, human) SB - IM MH - Base Pairing MH - Base Sequence MH - Humans MH - Methylation MH - Methyltransferases/*chemistry/genetics/metabolism MH - Mitochondria/metabolism/pathology MH - Mitochondrial Diseases/*genetics/metabolism/pathology MH - Mutation MH - RNA Folding MH - RNA Precursors/*chemistry/genetics/metabolism MH - *RNA Processing, Post-Transcriptional MH - RNA, Mitochondrial/*chemistry/genetics/metabolism MH - RNA, Transfer/*chemistry/genetics/metabolism PMC - PMC7962481 OTO - NOTNLM OT - PRORP OT - RNase P OT - mitochondrial diseases OT - pre-tRNA OT - tRNA mutations OT - tRNA processing EDAT- 2021/01/01 06:00 MHDA- 2021/04/22 06:00 PMCR- 2022/04/01 CRDT- 2020/12/31 05:19 PHST- 2020/07/07 00:00 [received] PHST- 2020/12/16 00:00 [accepted] PHST- 2021/01/01 06:00 [pubmed] PHST- 2021/04/22 06:00 [medline] PHST- 2020/12/31 05:19 [entrez] PHST- 2022/04/01 00:00 [pmc-release] AID - rna.077198.120 [pii] AID - RA [pii] AID - 10.1261/rna.077198.120 [doi] PST - ppublish SO - RNA. 2021 Apr;27(4):420-432. doi: 10.1261/rna.077198.120. Epub 2020 Dec 30.