PMID- 34006219
OWN - NLM
STAT- MEDLINE
DCOM- 20210611
LR  - 20221207
IS  - 2730-7182 (Electronic)
IS  - 2730-7182 (Linking)
VI  - 21
IP  - 1
DP  - 2021 May 18
TI  - Recent demographic histories of temperate deciduous trees inferred from 
      microsatellite markers.
PG  - 88
LID - 10.1186/s12862-021-01805-w [doi]
LID - 88
AB  - BACKGROUND: Accurate inference of demographic histories for temperate tree 
      species can aid our understanding of current climate change as a driver of 
      evolution. Microsatellites are more suitable for inferring recent historical 
      events due to their high mutation rates. However, most programs analyzing 
      microsatellite data assume a strict stepwise mutation model (SMM), which could 
      cause false detection of population shrinkage when microsatellite mutation does 
      not follow SMM. RESULTS: This study aims to reconstruct the recent demographic 
      histories of five cool-temperate tree species in Eastern Asia, Quercus mongolica, 
      Q. liaotungensis, Juglans cathayensis, J. mandshurica and J. ailantifolia, by 
      using 19 microsatellite markers with two methods considering generalized stepwise 
      mutation model (GSM) (MIGRAINE and VarEff). Both programs revealed that all the 
      five species experienced expansions after the Last Glacial Maximum (LGM). Within 
      butternuts, J. cathayensis experienced a more serious bottleneck than the other 
      species, and within oaks, Q. mongolica showed a moderate increase in population 
      size and remained stable after the expansion. In addition, the point estimates of 
      the multistep mutation proportion in the GSM model (p(GSM)) for all five species 
      were between 0.50 and 0.65, indicating that when inferring population demographic 
      history of the cool-temperate forest species using microsatellite markers, it is 
      better to assume a GSM rather than a SMM. CONCLUSIONS: This study provides the 
      first direct evidence that five cool-temperate tree species in East Asia have 
      experienced expansions after the LGM with microsatellite data. Considering the 
      mutation model of microsatellite has a vital influence on demographic inference, 
      combining multiple programs such as MIGRAINE and VarEff can effectively reduce 
      errors caused by inappropriate model selection and prior setting.
FAU - Cao, Yu
AU  - Cao Y
AD  - State Key Laboratory of Earth Surface Process and Resource Ecology and Ministry 
      of Education Key Laboratory for Biodiversity Science and Ecological Engineering, 
      College of Life Sciences, Beijing Normal University, Beijing, 100875, China.
FAU - Zhang, Da-Yong
AU  - Zhang DY
AD  - State Key Laboratory of Earth Surface Process and Resource Ecology and Ministry 
      of Education Key Laboratory for Biodiversity Science and Ecological Engineering, 
      College of Life Sciences, Beijing Normal University, Beijing, 100875, China.
FAU - Zeng, Yan-Fei
AU  - Zeng YF
AD  - State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, 
      Beijing, 100091, China.
FAU - Bai, Wei-Ning
AU  - Bai WN
AUID- ORCID: 0000-0002-6289-9459
AD  - State Key Laboratory of Earth Surface Process and Resource Ecology and Ministry 
      of Education Key Laboratory for Biodiversity Science and Ecological Engineering, 
      College of Life Sciences, Beijing Normal University, Beijing, 100875, China. 
      baiwn@bnu.edu.cn.
LA  - eng
GR  - 31421063/National Natural Science Foundation of China/
GR  - B13008/"111" Program of Introducing Talents of Discipline to Universities/
GR  - 2017YFA0605100/National Key R&D Program of China/
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
DEP - 20210518
PL  - England
TA  - BMC Ecol Evol
JT  - BMC ecology and evolution
JID - 101775613
RN  - 0 (DNA, Plant)
SB  - IM
MH  - DNA, Plant
MH  - Asia, Eastern
MH  - *Microsatellite Repeats/genetics
MH  - Phylogeography
MH  - *Trees/genetics
PMC - PMC8130339
OTO - NOTNLM
OT  - Asian butternuts
OT  - Demographic inference
OT  - Effective population size
OT  - MIGRAINE
OT  - Oaks
OT  - VarEff
COIS- The authors declare that they have no competing interests.
EDAT- 2021/05/20 06:00
MHDA- 2021/06/12 06:00
PMCR- 2021/05/18
CRDT- 2021/05/19 05:37
PHST- 2020/11/06 00:00 [received]
PHST- 2021/04/23 00:00 [accepted]
PHST- 2021/05/19 05:37 [entrez]
PHST- 2021/05/20 06:00 [pubmed]
PHST- 2021/06/12 06:00 [medline]
PHST- 2021/05/18 00:00 [pmc-release]
AID - 10.1186/s12862-021-01805-w [pii]
AID - 1805 [pii]
AID - 10.1186/s12862-021-01805-w [doi]
PST - epublish
SO  - BMC Ecol Evol. 2021 May 18;21(1):88. doi: 10.1186/s12862-021-01805-w.