PMID- 34139432 OWN - NLM STAT- MEDLINE DCOM- 20211203 LR - 20240402 IS - 2352-3964 (Electronic) IS - 2352-3964 (Linking) VI - 68 DP - 2021 Jun TI - Maternal fecal microbiome predicts gestational age, birth weight and neonatal growth in rural Zimbabwe. PG - 103421 LID - S2352-3964(21)00214-0 [pii] LID - 10.1016/j.ebiom.2021.103421 [doi] LID - 103421 AB - BACKGROUND: Preterm birth and low birth weight (LBW) affect one in ten and one in seven livebirths, respectively, primarily in low-income and middle-income countries (LMIC) and are major predictors of poor child health outcomes. However, both have been recalcitrant to public health intervention. The maternal intestinal microbiome may undergo substantial changes during pregnancy and may influence fetal and neonatal health in LMIC populations. METHODS: Within a subgroup of 207 mothers and infants enrolled in the SHINE trial in rural Zimbabwe, we performed shotgun metagenomics on 351 fecal specimens provided during pregnancy and at 1-month post-partum to investigate the relationship between the pregnancy gut microbiome and infant gestational age, birth weight, 1-month length-, and weight-for-age z-scores using extreme gradient boosting machines. FINDINGS: Pregnancy gut microbiome taxa and metabolic functions predicted birth weight and WAZ at 1 month more accurately than gestational age and LAZ. Blastoscystis sp, Brachyspira sp and Treponeme carriage were high compared to Western populations. Resistant starch-degraders were important predictors of birth outcomes. Microbiome capacity for environmental sensing, vitamin B metabolism, and signalling predicted increased infant birth weight and neonatal growth; while functions involved in biofilm formation in response to nutrient starvation predicted reduced birth weight and growth. INTERPRETATION: The pregnancy gut microbiome in rural Zimbabwe is characterized by resistant starch-degraders and may be an important metabolic target to improve birth weight. FUNDING: Bill and Melinda Gates Foundation, UK Department for International Development, Wellcome Trust, Swiss Agency for Development and Cooperation, US National Institutes of Health, and UNICEF. CI - Copyright (c) 2021 The Author(s). Published by Elsevier B.V. All rights reserved. FAU - Gough, Ethan K AU - Gough EK AD - Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA. Electronic address: amee.manges@ubc.ca. FAU - Edens, Thaddeus J AU - Edens TJ AD - Devil's Staircase Consulting, West Vancouver, British Columbia, Canada. FAU - Geum, Hyun Min AU - Geum HM AD - School of Population and Public Health, University of British Columbia, Vancouver, Canada. FAU - Baharmand, Iman AU - Baharmand I AD - School of Population and Public Health, University of British Columbia, Vancouver, Canada. FAU - Gill, Sandeep K AU - Gill SK AD - School of Population and Public Health, University of British Columbia, Vancouver, Canada. FAU - Robertson, Ruairi C AU - Robertson RC AD - Blizard Institute, Queen Mary University of London, London, UK. FAU - Mutasa, Kuda AU - Mutasa K AD - Zvitambo Institute for Maternal and Child Health Research, Harare, Zimbabwe. FAU - Ntozini, Robert AU - Ntozini R AD - Zvitambo Institute for Maternal and Child Health Research, Harare, Zimbabwe. FAU - Smith, Laura E AU - Smith LE AD - Zvitambo Institute for Maternal and Child Health Research, Harare, Zimbabwe; Department of Population Medicine and Diagnostics, Cornell University, Ithaca, NY, USA. FAU - Chasekwa, Bernard AU - Chasekwa B AD - Zvitambo Institute for Maternal and Child Health Research, Harare, Zimbabwe. FAU - Majo, Florence D AU - Majo FD AD - Zvitambo Institute for Maternal and Child Health Research, Harare, Zimbabwe. FAU - Tavengwa, Naume V AU - Tavengwa NV AD - Zvitambo Institute for Maternal and Child Health Research, Harare, Zimbabwe. FAU - Mutasa, Batsirai AU - Mutasa B AD - Zvitambo Institute for Maternal and Child Health Research, Harare, Zimbabwe. FAU - Francis, Freddy AU - Francis F AD - Department of Experimental Medicine, University of British Columbia, Canada. FAU - Carr, Lynnea AU - Carr L AD - Department of Microbiology and Immunology, University of British Columbia, Canada. FAU - Tome, Joice AU - Tome J AD - Zvitambo Institute for Maternal and Child Health Research, Harare, Zimbabwe. FAU - Stoltzfus, Rebecca J AU - Stoltzfus RJ AD - Goshen College, Goshen, Indiana, USA. FAU - Moulton, Lawrence H AU - Moulton LH AD - Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA. FAU - Prendergast, Andrew J AU - Prendergast AJ AD - Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA; Blizard Institute, Queen Mary University of London, London, UK; Zvitambo Institute for Maternal and Child Health Research, Harare, Zimbabwe. FAU - Humphrey, Jean H AU - Humphrey JH AD - Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA; Blizard Institute, Queen Mary University of London, London, UK. FAU - Manges, Amee R AU - Manges AR AD - School of Population and Public Health, University of British Columbia, Vancouver, Canada; British Columbia Centre for Disease Control, Vancouver, British Columbia, Canada. FAU - Team, Shine Trial AU - Team ST AD - Members of the SHINE Trial team who are not named authors are listed in https://academic.oup.com/cid/article/61/suppl_7/S685/358186. LA - eng GR - WT_/Wellcome Trust/United Kingdom GR - 206455/Z/17/Z/WT_/Wellcome Trust/United Kingdom GR - R01 HD060338/HD/NICHD NIH HHS/United States PT - Journal Article DEP - 20210615 PL - Netherlands TA - EBioMedicine JT - EBioMedicine JID - 101647039 RN - 0 (RNA, Ribosomal, 16S) SB - IM CIN - EBioMedicine. 2021 Jul;69:103449. PMID: 34157483 MH - Bacteria/*classification/genetics/isolation & purification MH - *Birth Weight MH - *Body Height MH - Child Development MH - Feces/*microbiology MH - Female MH - Gestational Age MH - High-Throughput Nucleotide Sequencing MH - Humans MH - Infant, Newborn MH - Male MH - Metagenomics/*methods MH - Mothers MH - Pregnancy MH - RNA, Ribosomal, 16S/*genetics MH - Randomized Controlled Trials as Topic MH - Rural Population MH - Sequence Analysis, DNA MH - Zimbabwe PMC - PMC8217692 OTO - NOTNLM OT - birth weight OT - gestation OT - maternal OT - metagenome OT - microbiome OT - pregnancy COIS- Declaration of Competing Interest None. EDAT- 2021/06/18 06:00 MHDA- 2021/12/15 06:00 PMCR- 2021/06/15 CRDT- 2021/06/17 20:16 PHST- 2020/12/21 00:00 [received] PHST- 2021/05/14 00:00 [revised] PHST- 2021/05/17 00:00 [accepted] PHST- 2021/06/18 06:00 [pubmed] PHST- 2021/12/15 06:00 [medline] PHST- 2021/06/17 20:16 [entrez] PHST- 2021/06/15 00:00 [pmc-release] AID - S2352-3964(21)00214-0 [pii] AID - 103421 [pii] AID - 10.1016/j.ebiom.2021.103421 [doi] PST - ppublish SO - EBioMedicine. 2021 Jun;68:103421. doi: 10.1016/j.ebiom.2021.103421. Epub 2021 Jun 15.